3300000902: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2

Overview

Basic Information

• IMG/M Taxon OID: 3300000902
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0054581 | Ga0002404
• Sample Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14622935
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Ceratobasidiaceae → Rhizoctonia → Rhizoctonia solani	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016972	Metagenome / Metatranscriptome	243	Y
F024195	Metagenome / Metatranscriptome	207	Y
F037452	Metagenome / Metatranscriptome	168	Y
F039839	Metagenome / Metatranscriptome	163	Y
F061214	Metagenome / Metatranscriptome	132	Y
F061340	Metagenome / Metatranscriptome	132	Y
F082940	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12144J12865_100039	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae	2837
JGI12144J12865_100101	Not Available	2096
JGI12144J12865_100231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1595
JGI12144J12865_100361	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1394
JGI12144J12865_101511	Not Available	802
JGI12144J12865_101742	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Cantharellales → Ceratobasidiaceae → Rhizoctonia → Rhizoctonia solani	753
JGI12144J12865_103829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	545
JGI12144J12865_104160	Not Available	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12144J12865_100039	JGI12144J12865_1000395	F024195	MRTDSIINVLGAIVTVALVTTIVAHPQSASVITSLGNAFSGSIKAATGG*
JGI12144J12865_100101	JGI12144J12865_1001012	F061340	MNLTINNISFLKDLDNNIKVDMRSG*RHHYIDASNLIEITSFIRLIGEDKIYLIIPLFCTSQSLSLPTLNLSEPFLVNNNSNSSLIIKFIIDQYKSSGFTIEEHTTIIFAFKFKRV*FSDK*
JGI12144J12865_100231	JGI12144J12865_1002311	F037452	VLVSLMGNSILSEVDNTSISGWGSQTRQRFPVSWLPVSRLLPPRSGLERSDFVLWH
JGI12144J12865_100361	JGI12144J12865_1003611	F061214	MSARCRLVNELVKLTNINLALKEPPINGGLTYEGPKVAEYPGR*
JGI12144J12865_101511	JGI12144J12865_1015112	F037452	MGNSILSEVDNTSISGWGSQTRQRFPVSWLPVSRLLPPRSGLERSDFVLWH
JGI12144J12865_101742	JGI12144J12865_1017421	F016972	VRLTPLTDEIPVVTLNLTINEFYIFSFGAKTSRYGPHELGYRRATKTFTK*
JGI12144J12865_103829	JGI12144J12865_1038291	F082940	LSQAGIARARTRLWTAHYGLGEHICGPASCGALSINADGTQWTSSAMGLVLDQSLLVADFFTGTANNPTVTEAELQSGQLNTGNGAFTVIAVPPGTAHYIGFGLDNHAQNVPVARLRVAFFDTAWHVHPDVVIDGNHGLQTMPFANPAKTGVVSVRRNDTGNQAVGYVIY*
JGI12144J12865_104160	JGI12144J12865_1041602	F039839	MRSESSARRFASPGFRSAGRPGLRFGLPLTPESGGPSRHPAARYALTVIRARRHQESQ