3300000707: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 39

Overview

Basic Information

• IMG/M Taxon OID: 3300000707
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0075432 | Gp0054745 | Ga0001962
• Sample Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 39
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10000255
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → tropical forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011271	Metagenome	292	Y
F012657	Metagenome	278	Y
F015573	Metagenome	253	Y
F018438	Metagenome / Metatranscriptome	235	Y
F031966	Metagenome / Metatranscriptome	181	Y
F078037	Metagenome	116	N
F085267	Metagenome	111	N
F091102	Metagenome	107	N
F097461	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12295J11885_100227	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1403
JGI12295J11885_100653	Not Available	931
JGI12295J11885_101042	Not Available	750
JGI12295J11885_101166	Not Available	711
JGI12295J11885_101910	Not Available	587
JGI12295J11885_102449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	536
JGI12295J11885_102467	All Organisms → cellular organisms → Bacteria	534
JGI12295J11885_102572	Not Available	527

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12295J11885_100227	JGI12295J11885_1002271	F085267	MSFLRHGEIYPWHEGTISRPCPRPSQWMSFQPVIPGGLLSSRARVRFTS
JGI12295J11885_100653	JGI12295J11885_1006532	F091102	PVAGLKSLFPKAAKNFHSVETFFPRPGPAPRSSLESKADSDFNSVVNYTVRHLGENRMKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCTRGLYGTMHDENDPTSALLIVVPEGSYLFDYYVAVCRAVTHEEPYLPQKH*
JGI12295J11885_101042	JGI12295J11885_1010421	F012657	RRSSPRSSLLWKSGHNRSFVNQKGRDLLVCSRDFETKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR*
JGI12295J11885_101166	JGI12295J11885_1011661	F011271	ARIDFQLEPKERQALKLAEIREALVAAGYDTTAKQAAVLGVCRSTAWVLLNRDKRAGPSAKVIKRILSSSQVPGRARRKVEQYVEQKARGLYGHCASATRSFGHQFQHL*
JGI12295J11885_101910	JGI12295J11885_1019103	F031966	EEEDEMTTIPATTLSRQERGTVRKNSRFSKGLIFVAALYLAVAIIELSIIVLAAPGIAEIGSLYVPVP*
JGI12295J11885_102449	JGI12295J11885_1024491	F078037	PFMDAKVSAVILVTAFTASAALAQGPSTEKLKADAQEVVKIISSDSAKAQAYCETIKLGDQMDQAEQNNDSDKAEGLSNKIDELNQKLGPEYLKLGQDLQDIDPNSPDGLELXRTLAALDKLCK*
JGI12295J11885_102467	JGI12295J11885_1024672	F018438	MGIDDKSSHPELCLEVAGGVTRTIVGLFREPDAGNPPVRFDEREQETELCQTGLRRRCKNFVNSHRETNATAPVLDSTH
JGI12295J11885_102545	JGI12295J11885_1025452	F097461	VAAVLAGQCDNVGGEPLFVXSAPRYLALCRAMLPERRTGAALGDMHDFSDLLDIGASARGA*
JGI12295J11885_102572	JGI12295J11885_1025721	F015573	VAETESPPQDELHNPAVYLERIAREIKIIREMMSKVVNYMVDAESEIPEKMRRFIMYMHDVHDVLNMYQEIGQEPPQHVKREAERCDDRYRQILYEMHTDGGAFEKVRRNMASDPENRWDHTRFLPKRKESDNEAGKSNE