NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F105825

Metagenome / Metatranscriptome Family F105825

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105825
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 41 residues
Representative Sequence VNFVSSGVVANQTGQLGFKKAFLVRDPDGHAIEIEEK
Number of Associated Samples 84
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.00 %
% of genes near scaffold ends (potentially truncated) 95.00 %
% of genes from short scaffolds (< 2000 bps) 94.00 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (95.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(15.000 % of family members)
Environment Ontology (ENVO) Unclassified
(31.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(42.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 27.69%    Coil/Unstructured: 72.31%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF08240ADH_N 2.00
PF03200Glyco_hydro_63 2.00
PF16912Glu_dehyd_C 1.00
PF12439GDE_N 1.00
PF00230MIP 1.00
PF01979Amidohydro_1 1.00
PF12146Hydrolase_4 1.00
PF05742TANGO2 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0580Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)Carbohydrate transport and metabolism [G] 1.00
COG3332Uncharacterized stress-responsive protein, TANGO2 (Transport and Golgi organisation 2) family, contains NRDE motifGeneral function prediction only [R] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.00 %
UnclassifiedrootN/A5.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000703|JGI12416J11903_101977All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300001867|JGI12627J18819_10373665All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300002562|JGI25382J37095_10228828Not Available561Open in IMG/M
3300005093|Ga0062594_103067927All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria522Open in IMG/M
3300005176|Ga0066679_10157890All Organisms → cellular organisms → Bacteria1424Open in IMG/M
3300005455|Ga0070663_100389591All Organisms → cellular organisms → Bacteria1137Open in IMG/M
3300005456|Ga0070678_101460707All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300005526|Ga0073909_10000777All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria10119Open in IMG/M
3300005546|Ga0070696_100626732All Organisms → cellular organisms → Bacteria869Open in IMG/M
3300005548|Ga0070665_101640551All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300005555|Ga0066692_10749585All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300005559|Ga0066700_10520007All Organisms → cellular organisms → Bacteria830Open in IMG/M
3300005616|Ga0068852_100945861All Organisms → cellular organisms → Bacteria880Open in IMG/M
3300006046|Ga0066652_101540224All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Chlorogloeopsidaceae → Chlorogloeopsis → Chlorogloeopsis fritschii614Open in IMG/M
3300006059|Ga0075017_100031007All Organisms → cellular organisms → Bacteria3524Open in IMG/M
3300006172|Ga0075018_10154804All Organisms → cellular organisms → Bacteria → Acidobacteria1060Open in IMG/M
3300006172|Ga0075018_10554616All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300006175|Ga0070712_101007216All Organisms → cellular organisms → Bacteria → Acidobacteria721Open in IMG/M
3300006354|Ga0075021_10441440All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300006358|Ga0068871_100646792All Organisms → cellular organisms → Bacteria → Acidobacteria965Open in IMG/M
3300006804|Ga0079221_10113449All Organisms → cellular organisms → Bacteria → Acidobacteria1356Open in IMG/M
3300006854|Ga0075425_101777646All Organisms → cellular organisms → Bacteria692Open in IMG/M
3300006854|Ga0075425_102512721All Organisms → cellular organisms → Bacteria → Acidobacteria570Open in IMG/M
3300009012|Ga0066710_101542344All Organisms → cellular organisms → Bacteria1022Open in IMG/M
3300009088|Ga0099830_10223601All Organisms → cellular organisms → Bacteria1481Open in IMG/M
3300010043|Ga0126380_11260658All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300010048|Ga0126373_12980765All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium528Open in IMG/M
3300010303|Ga0134082_10368426All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300010335|Ga0134063_10431199All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300010339|Ga0074046_10290556All Organisms → cellular organisms → Bacteria1006Open in IMG/M
3300010361|Ga0126378_10529859All Organisms → cellular organisms → Bacteria1293Open in IMG/M
3300010361|Ga0126378_11255943All Organisms → cellular organisms → Bacteria837Open in IMG/M
3300010376|Ga0126381_102223038Not Available789Open in IMG/M
3300010376|Ga0126381_102990254All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300010376|Ga0126381_103112027All Organisms → cellular organisms → Bacteria657Open in IMG/M
3300010379|Ga0136449_100890983All Organisms → cellular organisms → Bacteria1452Open in IMG/M
3300011270|Ga0137391_10196918All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1753Open in IMG/M
3300012200|Ga0137382_10750251All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300012201|Ga0137365_10479962All Organisms → cellular organisms → Bacteria914Open in IMG/M
3300012202|Ga0137363_11467338All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300012206|Ga0137380_10780602All Organisms → cellular organisms → Bacteria826Open in IMG/M
3300012211|Ga0137377_11015102All Organisms → cellular organisms → Bacteria760Open in IMG/M
3300012224|Ga0134028_1156675All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300012349|Ga0137387_10387737All Organisms → cellular organisms → Bacteria1013Open in IMG/M
3300012349|Ga0137387_10446256All Organisms → cellular organisms → Bacteria939Open in IMG/M
3300012362|Ga0137361_11047544All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300012362|Ga0137361_11730250Not Available544Open in IMG/M
3300012389|Ga0134040_1156765All Organisms → cellular organisms → Bacteria1450Open in IMG/M
3300012403|Ga0134049_1138848All Organisms → cellular organisms → Bacteria778Open in IMG/M
3300012930|Ga0137407_11547714All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300013102|Ga0157371_10407100All Organisms → cellular organisms → Bacteria996Open in IMG/M
3300013102|Ga0157371_11116406All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300013296|Ga0157374_10244691All Organisms → cellular organisms → Bacteria1764Open in IMG/M
3300013308|Ga0157375_12903485All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300014162|Ga0181538_10127979All Organisms → cellular organisms → Bacteria1473Open in IMG/M
3300015053|Ga0137405_1128035Not Available1222Open in IMG/M
3300015245|Ga0137409_10440714All Organisms → cellular organisms → Bacteria1121Open in IMG/M
3300016270|Ga0182036_10686749All Organisms → cellular organisms → Bacteria827Open in IMG/M
3300016404|Ga0182037_10947647All Organisms → cellular organisms → Bacteria748Open in IMG/M
3300016404|Ga0182037_11552540All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium588Open in IMG/M
3300016445|Ga0182038_10473917All Organisms → cellular organisms → Bacteria1063Open in IMG/M
3300017932|Ga0187814_10406716All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300017946|Ga0187879_10270743All Organisms → cellular organisms → Bacteria945Open in IMG/M
3300017994|Ga0187822_10301595All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300018043|Ga0187887_10138824All Organisms → cellular organisms → Bacteria1457Open in IMG/M
3300021168|Ga0210406_10677925All Organisms → cellular organisms → Bacteria797Open in IMG/M
3300021178|Ga0210408_10725164All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium782Open in IMG/M
3300021362|Ga0213882_10064161All Organisms → cellular organisms → Bacteria1463Open in IMG/M
3300021388|Ga0213875_10240264All Organisms → cellular organisms → Bacteria854Open in IMG/M
3300025910|Ga0207684_10476338All Organisms → cellular organisms → Bacteria1071Open in IMG/M
3300025920|Ga0207649_11401228All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300026325|Ga0209152_10302270All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300026354|Ga0257180_1062076All Organisms → cellular organisms → Bacteria539Open in IMG/M
3300026538|Ga0209056_10423721All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.792Open in IMG/M
3300026542|Ga0209805_1020642All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.3453Open in IMG/M
3300027527|Ga0209684_1053943All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300027824|Ga0209040_10107185All Organisms → cellular organisms → Bacteria1572Open in IMG/M
3300027824|Ga0209040_10141169All Organisms → cellular organisms → Bacteria1311Open in IMG/M
3300027875|Ga0209283_10330047All Organisms → cellular organisms → Bacteria1003Open in IMG/M
3300027911|Ga0209698_10427104All Organisms → cellular organisms → Bacteria1033Open in IMG/M
3300028380|Ga0268265_12646352All Organisms → cellular organisms → Bacteria → Acidobacteria507Open in IMG/M
3300028381|Ga0268264_10204034All Organisms → cellular organisms → Bacteria1810Open in IMG/M
3300031231|Ga0170824_110307263All Organisms → cellular organisms → Bacteria1138Open in IMG/M
3300031231|Ga0170824_111309008All Organisms → cellular organisms → Bacteria1260Open in IMG/M
3300031231|Ga0170824_117605106All Organisms → cellular organisms → Bacteria3041Open in IMG/M
3300031232|Ga0302323_101344358All Organisms → cellular organisms → Bacteria → Acidobacteria801Open in IMG/M
3300031781|Ga0318547_10517108All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300031910|Ga0306923_10796582All Organisms → cellular organisms → Bacteria1044Open in IMG/M
3300031912|Ga0306921_10102740Not Available3314Open in IMG/M
3300032001|Ga0306922_11974488All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300032160|Ga0311301_10881292All Organisms → cellular organisms → Bacteria1210Open in IMG/M
3300032180|Ga0307471_100784859All Organisms → cellular organisms → Bacteria1119Open in IMG/M
3300032180|Ga0307471_102812543All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium618Open in IMG/M
3300032180|Ga0307471_102936609All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium605Open in IMG/M
3300032180|Ga0307471_103602046All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300032783|Ga0335079_10182105All Organisms → cellular organisms → Bacteria2340Open in IMG/M
3300032783|Ga0335079_10890390All Organisms → cellular organisms → Bacteria915Open in IMG/M
3300033004|Ga0335084_11318538All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300033158|Ga0335077_10682343All Organisms → cellular organisms → Bacteria1060Open in IMG/M
3300033289|Ga0310914_11027476All Organisms → cellular organisms → Bacteria725Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil15.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil7.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.00%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds5.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil5.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.00%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil3.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.00%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.00%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.00%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.00%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.00%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.00%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.00%
Exposed RockEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock1.00%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere1.00%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.00%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots1.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.00%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000703Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14EnvironmentalOpen in IMG/M
3300001867Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)EnvironmentalOpen in IMG/M
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012224Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012389Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012403Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021362Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09EnvironmentalOpen in IMG/M
3300021388Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026354Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-BEnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026542Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)EnvironmentalOpen in IMG/M
3300027527Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031232Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12416J11903_10197713300000703Tropical Forest SoilRNARARFVSSGVVANHMKEIEFSKAFIVRDPDGHPVEIAAQ*
JGI12627J18819_1037366513300001867Forest SoilAQVSFVSSGVVVNHTEQLGFTKAVVVRDPDGHAVEVEQK*
JGI25382J37095_1022882813300002562Grasslands SoilEAKVSFVSSEVVANQNRELGFPKAFVVRDPDGHAIEIKEK*
Ga0062594_10306792713300005093SoilSAHTKFVSSGLVTESDGQLGFRNALLVRDPDGHPILIEEK*
Ga0066679_1015789043300005176SoilELGAGKTSFVSSGVVVNQKEQLGFHRAFVIRDPDGHAIELEEK*
Ga0070663_10038959133300005455Corn RhizosphereSRVNFVSSGVVANQTGQLGFNKAFIVRDPDGHAVEFEEK*
Ga0070678_10146070713300005456Miscanthus RhizosphereRQLQSSRVNFVSSGVVANQTGQLGFNKAFIVRDPDGHAVEFEEK*
Ga0073909_10000777103300005526Surface SoilVSSGVVANQTGQLGFKKALLVRDPDGHAIEIEEK*
Ga0070696_10062673213300005546Corn, Switchgrass And Miscanthus RhizosphereQTSRVNFVSSGVVANQTGQLGFNKAFIVRDPDGHAVEFEEK*
Ga0070665_10164055133300005548Switchgrass RhizosphereKFVSSGLVTESDGQLGFRNALLVRDPDGHPILIEEK*
Ga0066692_1074958513300005555SoilVNFVSSGVVANQTGQLGFSKALLVRDPDGHAIEIEEK*
Ga0066700_1052000713300005559SoilQLHSGKVNFVSSGVVANQTGQLGFSKALLVRDPDGHAVEIEEK*
Ga0068852_10094586113300005616Corn RhizosphereKLVSAHTKFVSSGLVTESDGQLGFRNALLVRDPDGHPVLIEEK*
Ga0066652_10154022413300006046SoilRVRFVSSGVVANHMQMLDFSKAFLVRDPDGHAIEIAAQ*
Ga0075017_10003100713300006059WatershedsVSSGVVANQTGQLGFSKALLVRDPDGHAIEIEEK*
Ga0075018_1015480433300006172WatershedsVSSGVIANQNGQLGFSKAFVVRDPDGHAVEIEQK*
Ga0075018_1055461613300006172WatershedsVNFVSSGVVANHTGQLGFSKALLVRDPDGHAIEIEEK*
Ga0070712_10100721633300006175Corn, Switchgrass And Miscanthus RhizosphereFVSSGVVANQTGELGFSKAFVVRDPDGHAVELEEKNLEEK*
Ga0075021_1044144033300006354WatershedsSSRVNFVSSGVVPNQTGQLGFSKAFVVRDPDGHAVEIEEK*
Ga0068871_10064679233300006358Miscanthus RhizosphereSVAKANFVSSGLIVNHNGELGFSAAFIARDPDGHAVEIEQK*
Ga0079221_1011344933300006804Agricultural SoilVSSGLVTESDGQLGFRNALLVRDPDGHPILIEEK*
Ga0075425_10177764623300006854Populus RhizosphereMRRPVNCIAGNVIFVSSRVVANQNAQFEFTNAFLVRDAAGHAIEIEQK*
Ga0075425_10251272113300006854Populus RhizosphereFVSSGVFIESDGQLGFKRAFLIRDPDGHAILIEEK*
Ga0066710_10154234433300009012Grasslands SoilTGRVNFVSSGVVANQTGQLGFSKALLVRDPDGHVIEIEEK
Ga0099830_1022360113300009088Vadose Zone SoilFVSSGVVANQKTQLGFNKAFLVRDPDGHTIAIEER*
Ga0126380_1126065813300010043Tropical Forest SoilDHAARDLSSKVNFVSFGVITNQMDKLGCKSAFIVRDPDGHAVEIEQK*
Ga0126373_1298076513300010048Tropical Forest SoilDEAARDLFSAKVNFVSSGVIANQKDELDYKSAFIARDPDGHAMEIEQK*
Ga0134082_1036842633300010303Grasslands SoilKVNFVSSGVVANQNEQLGFRKAFLARDPDGHAIEIEEK*
Ga0134063_1043119913300010335Grasslands SoilKVNFVSSSVVANQNEQLGFRKAFLARDPDGHAIEIEEK*
Ga0074046_1029055633300010339Bog Forest SoilAARQLQTSRVNFVSSGVFVNQTGELGFSKAFLVRDPDGHTVEIEEK*
Ga0126378_1052985933300010361Tropical Forest SoilLYSAKVNFVSSAVIANQKDELGYRTAFIVRDPDGHAVEIEQK*
Ga0126378_1125594313300010361Tropical Forest SoilAARNLFSAKVSFVSSGVIANQKRELGYGSAFIVRDPDGHAIEIEQK*
Ga0126381_10222303833300010376Tropical Forest SoilTARVNFVSSDVVVNQITQLGFSKAFVVRDPDGHALEIEET*
Ga0126381_10299025413300010376Tropical Forest SoilTVLVTESTDQAARDLFSAKVNFVSSAEIANQKDELGYRTAFIVRDPDGPAVEIEQK*
Ga0126381_10311202733300010376Tropical Forest SoilRDLLLAKVNFVSSGVVENQMDKLGYRTAFIVRDPDGHAVEIEQK*
Ga0136449_10089098333300010379Peatlands SoilSRVNFVSSGVFVNQTGELGFSKAFLVRDPDGHAVEIEEK*
Ga0137391_1019691833300011270Vadose Zone SoilLYGGKVRFVSFGVVANQKGQLGFDKAFLARDPDGRVMAIAER*
Ga0137382_1075025113300012200Vadose Zone SoilHAGNVIFVSSVMVANQNAQLGFAKAFLVRDADEHAIEIEQK*
Ga0137365_1047996213300012201Vadose Zone SoilNFVSSGLIVNHSRELAFTSAFIVRDPDGHAVEVEQK*
Ga0137363_1146733813300012202Vadose Zone SoilFVSSGVVANQTGQLGFNKAFLIRDPDGHVIELEEK*
Ga0137380_1078060213300012206Vadose Zone SoilRRLQSSRVNFVSAGVVANQTGQLGFSKALLVRDPDGHAIEIEEK*
Ga0137377_1101510213300012211Vadose Zone SoilVSPRVVALPDGPLGFREAFLARDPDGHALQFRSR*
Ga0134028_115667533300012224Grasslands SoilVSSGVVANQNEQLGFRKAFLARDPDGHAIEIEEK*
Ga0137387_1038773733300012349Vadose Zone SoilFVSSGVVVNQTGQLGFNKAFVVRDPDGHPIEIEEK*
Ga0137387_1044625633300012349Vadose Zone SoilQLQSGKVNFVSSGVVANQTGELGFSKALLVRDPDGHAIEIEEK*
Ga0137361_1104754413300012362Vadose Zone SoilSFVSSGVLANPTGQLGFQKALLVRDPDGHTIEIEEK*
Ga0137361_1173025033300012362Vadose Zone SoilNFVSSGVVANQTGQLGFNKAFIVRDPDGHAVELEEK*
Ga0134040_115676513300012389Grasslands SoilKVNFVSSGVVANQNEQLGFRKAFLARDPDGHAIEVEEK*
Ga0134049_113884813300012403Grasslands SoilFVSSGVVANPTGEPGFKKALLVRDPDGHVIELEQK*
Ga0137407_1154771413300012930Vadose Zone SoilNCNAGNVIFVSSGVVANQNAQLGFAKAFLVRDADGHAIEIEQK*
Ga0157371_1040710013300013102Corn RhizosphereVGARVNFVSSGVVANQNNRLGFSKALVVRDPDGHAIEVEQK*
Ga0157371_1111640633300013102Corn RhizosphereADQAARNLALAKLNFVSSEVVANHNAQLEFTSAFIVRDPDGHAVEIQQK*
Ga0157374_1024469113300013296Miscanthus RhizosphereSSRVNFVSSGVVANQTGQLGFNKAFIVRDPDGHAVEFEEK*
Ga0157375_1290348533300013308Miscanthus RhizosphereARQLQSSRVNFVSSGVVANQTGQLGFNKAFIVRDPDGHAVEFEEK*
Ga0181538_1012797923300014162BogMTRSSAETERVTLVSSGVIANQAGQLGFSKALPVRDRDGHAIEMEEK*
Ga0137405_112803513300015053Vadose Zone SoilSSGVVANQKGQQLGFNKAFLARDPDGHVMAIAER*
Ga0137409_1044071413300015245Vadose Zone SoilRDRVNFVSSGVIANQTGQLRFSKAFLVRDPDGHAIEIEEK*
Ga0182036_1068674943300016270SoilAQKLSANGTNFVSSGVVPNPTGQIGFSKAFLVRDADGHPIEFEEK
Ga0182037_1094764733300016404SoilLFSAKVNFVSSGVIANQMDELGYRAAFMVRDPDGHAVEIEQK
Ga0182037_1155254013300016404SoilTTQNADGAAQKLSANGTNFVSSGVVPNPTGQIGFSKAFLVRDADGHPIEFEEK
Ga0182038_1047391733300016445SoilLAKVNFVSSGVIANQKDELGFRTALIVRDPDGHAVEIEQK
Ga0187814_1040671613300017932Freshwater SedimentARSLSAAQVNFVSSGAVVNHMEQLGFTKAVIVRDPDGHAIEVEEK
Ga0187879_1027074333300017946PeatlandTFVSSGVVANQTGKLGFSKAFVVRDPDGHAIEIEEK
Ga0187822_1030159513300017994Freshwater SedimentEQAAHDLTSAKVNLVSSRLVANQTEQLGFKSALIVRDPDGHAVEIEQK
Ga0187887_1013882413300018043PeatlandTSRVTFVSSGVVANQTGKLGFSRAFVVRDPDGHAIEIEEK
Ga0210406_1067792533300021168SoilNQFVSSGMIANQNGQLEFSKALVIRYSDGHAIEIEQK
Ga0210408_1072516423300021178SoilVAKHTSRVNFVSSGVVADQTTQMGFNKTFLVRDPDGHVVENEEK
Ga0213882_1006416113300021362Exposed RockLTTGADNAAHNLSSAQVNFVSSGVVVNQIHLLGFSRAFVIRDPDGHAIEIEEK
Ga0213875_1024026433300021388Plant RootsVNFVSSGVVANQIHLLGFSRAFVIRDPDGHAIEIEEK
Ga0207684_1047633823300025910Corn, Switchgrass And Miscanthus RhizosphereHASFVSSGVIAESDGQLGFKKAFVVRDPDGHAILVEEK
Ga0207649_1140122823300025920Corn RhizosphereFSNAHASFVSSGVVTESDGQLGFKKAFVARDPDGHAILVEEK
Ga0209152_1030227033300026325SoilSNAHASFVSSGVVAESDGQLGFKKAFLARDPDGHAILVEER
Ga0257180_106207613300026354SoilSFVSSEVVANQNRGLEFTKAFVVRDPDGHAIEIEER
Ga0209056_1042372123300026538SoilGRNLANAKINFVSSGVVVNQNNQLGFSKALVVRDPDGHAIEIEQK
Ga0209805_102064213300026542SoilNFVSSGVVANQNEQLGFRKAFLARDPDGHAIEIEEK
Ga0209684_105394313300027527Tropical Forest SoilSAKVNFVSSAVIANQKDELGYRTAFIVRDPDGHAVEIEQK
Ga0209040_1010718533300027824Bog Forest SoilRVTFVSSGVVANHMRMLDFSKAFLVRDPDGHAIEIAAP
Ga0209040_1014116923300027824Bog Forest SoilTSRVNFVSSGVFVNQTGELGFSKAFLVRDPDGHAVEIEEK
Ga0209283_1033004713300027875Vadose Zone SoilYMARVNFVSSGVVVNQKRQLGFNKAFLVRDPDGHAILIAEK
Ga0209698_1042710413300027911WatershedsKTQFVSSGVIANQNGQLGFSKAFTVRDPDGHAIEIEQK
Ga0268265_1264635223300028380Switchgrass RhizosphereVSSGVVANQTGELGFSKAFVVRDPDGHAVELEEKNLEEK
Ga0268264_1020403433300028381Switchgrass RhizosphereQSSRVNFVSSGVVANQTGQLGFNKAFIVRDPDGHAVEFEEK
Ga0170824_11030726313300031231Forest SoilVNFVSSGVVANQTGQLGFSKALLVRDPDGHAIEIEEK
Ga0170824_11130900813300031231Forest SoilARQLNSGKVNFVSSGVVTNQTGQLGFSKALLVRDPDGHAVEIEEK
Ga0170824_11760510633300031231Forest SoilVNFVSSGVVANQTGQLGFKKAFLVRDPDGHAIEIEEK
Ga0302323_10134435833300031232FenSAARQLSTAKAIFVSSGVVPNHNPQLGFTKALVVRDPDGHAVELEQK
Ga0318547_1051710833300031781SoilARDLFLAKVNFVSSGVIANQKDELGFRTALIVRDPDGHAVEIEQK
Ga0306923_1079658213300031910SoilVNFVSSGVIANQKDELGYRAAFIVRDPDGHAVEIEQK
Ga0306921_1010274043300031912SoilLLLAKVNFVSSGVIANQKDELGFRTALIVRDPDGHAVEIEQK
Ga0306922_1197448813300032001SoilAAFVSSGVVANPTGQLGFKKALLVRDPDRHVIELEEK
Ga0311301_1088129233300032160Peatlands SoilSRVNFVSSGVFVNQTGELGFSKAFLVRDPDGHAVEIEEK
Ga0307471_10078485913300032180Hardwood Forest SoilAAKVKFVSSGVVANHMESLDFSKAFLVRDPDGHAIEIAAQ
Ga0307471_10281254313300032180Hardwood Forest SoilVDRAVRDLSAAQVNFVSSGIVVNHTEQIGFTNAVMVRDPDGHAVEVEEK
Ga0307471_10293660933300032180Hardwood Forest SoilLRAGKTSFVSSGVVVNQKEQLGFHRAFVIRDPDGHAIELKEK
Ga0307471_10360204613300032180Hardwood Forest SoilAARVNFVSSGVVANQKTQLGFNKAFLVRDPDGHTIAIEER
Ga0335079_1018210513300032783SoilLAKTNFVSSGLIANQNRELGFKAAFVVRDPDGHAIEIEEK
Ga0335079_1089039013300032783SoilELGLAKATFVSSGLIANQTRELGFKAAFVVRDPDGHALEIEEK
Ga0335084_1131853813300033004SoilAKANFVSSGLIANQNKELGFKTAFVVRDPDGHAIEIEEK
Ga0335077_1068234313300033158SoilNFVSSGVIANQMDELGYRNALIVRDPDGHAVEIEQQ
Ga0310914_1102747633300033289SoilSRLVSSGVVVNHTQELEFTKGFLVRDPDGHAIEIAGR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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