Sample 3300000699

Overview

Basic Information
IMG/M Taxon OID	3300000699 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0075432 \| Gp0054379 \| Ga0002002
Sample Name	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 79
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	9424338
Sequencing Scaffolds	18
Novel Protein Genes	18
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. C49	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Luquillo Experimental Forest Soil, Puerto Rico
Coordinates	Lat. (^o)	18.0	Long. (^o)	-65.0	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002616	Metagenome / Metatranscriptome	543	Y
F003090	Metagenome / Metatranscriptome	508	Y
F005929	Metagenome / Metatranscriptome	386	Y
F006756	Metagenome / Metatranscriptome	365	Y
F010450	Metagenome / Metatranscriptome	303	Y
F011271	Metagenome	292	Y
F012657	Metagenome	278	Y
F019273	Metagenome	230	Y
F022958	Metagenome / Metatranscriptome	212	Y
F027165	Metagenome	195	Y
F031318	Metagenome	182	Y
F034501	Metagenome	174	Y
F062953	Metagenome / Metatranscriptome	130	Y
F063348	Metagenome	129	N
F065994	Metagenome / Metatranscriptome	127	Y
F083637	Metagenome / Metatranscriptome	112	N

Family

Category

Number of Sequences

3D Structure?

F002616

Metagenome / Metatranscriptome

543

F003090

Metagenome / Metatranscriptome

508

F005929

Metagenome / Metatranscriptome

386

F006756

Metagenome / Metatranscriptome

365

F010450

Metagenome / Metatranscriptome

303

F011271

Metagenome

292

F012657

Metagenome

278

F019273

Metagenome

230

F022958

Metagenome / Metatranscriptome

212

F027165

Metagenome

195

F031318

Metagenome

182

F034501

Metagenome

174

F062953

Metagenome / Metatranscriptome

130

F063348

Metagenome

129

F065994

Metagenome / Metatranscriptome

127

F083637

Metagenome / Metatranscriptome

112

Scaffold	Taxonomy	Length	IMG/M Link
JGI12536J11923_100271	Not Available	1648	Open in IMG/M
JGI12536J11923_100394	All Organisms → cellular organisms → Bacteria → Proteobacteria	1461	Open in IMG/M
JGI12536J11923_100483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1374	Open in IMG/M
JGI12536J11923_101094	Not Available	971	Open in IMG/M
JGI12536J11923_101141	All Organisms → cellular organisms → Bacteria → Proteobacteria	947	Open in IMG/M
JGI12536J11923_101276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	902	Open in IMG/M
JGI12536J11923_101546	Not Available	818	Open in IMG/M
JGI12536J11923_101562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	814	Open in IMG/M
JGI12536J11923_102228	Not Available	688	Open in IMG/M
JGI12536J11923_102420	Not Available	660	Open in IMG/M
JGI12536J11923_102434	Not Available	658	Open in IMG/M
JGI12536J11923_102508	Not Available	648	Open in IMG/M
JGI12536J11923_102771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	616	Open in IMG/M
JGI12536J11923_103180	Not Available	577	Open in IMG/M
JGI12536J11923_103609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	543	Open in IMG/M
JGI12536J11923_103630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. C49	542	Open in IMG/M
JGI12536J11923_103964	Not Available	519	Open in IMG/M
JGI12536J11923_103984	Not Available	519	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI12536J11923_100271

Not Available

1648

Open in IMG/M

JGI12536J11923_100394

All Organisms → cellular organisms → Bacteria → Proteobacteria

1461

Open in IMG/M

JGI12536J11923_100483

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

1374

Open in IMG/M

JGI12536J11923_101094

Not Available

971

Open in IMG/M

JGI12536J11923_101141

All Organisms → cellular organisms → Bacteria → Proteobacteria

947

Open in IMG/M

JGI12536J11923_101276

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium

902

Open in IMG/M

JGI12536J11923_101546

Not Available

818

Open in IMG/M

JGI12536J11923_101562

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis

814

Open in IMG/M

JGI12536J11923_102228

Not Available

688

Open in IMG/M

JGI12536J11923_102420

Not Available

660

Open in IMG/M

JGI12536J11923_102434

Not Available

658

Open in IMG/M

JGI12536J11923_102508

Not Available

648

Open in IMG/M

JGI12536J11923_102771

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

616

Open in IMG/M

JGI12536J11923_103180

Not Available

577

Open in IMG/M

JGI12536J11923_103609

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

543

Open in IMG/M

JGI12536J11923_103630

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. C49

542

Open in IMG/M

JGI12536J11923_103964

Not Available

519

Open in IMG/M

JGI12536J11923_103984

Not Available

519

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI12536J11923_100271	JGI12536J11923_1002713	F019273	MIYRVRTNKKYPFKQMQPGETFKLNDEDVRSAQKMAWSYRTRCKRPIRIIIAKSDDGFHCHRID*
JGI12536J11923_100394	JGI12536J11923_1003942	F010450	MNSVPFSRDFVAAGASAYRPRGEPGLAQRGLLRRVVDAIALSHQRAVERDIARVLGLSYPGGRLTDEIERRLFEHLNGDR
JGI12536J11923_100483	JGI12536J11923_1004832	F012657	PEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG*
JGI12536J11923_101094	JGI12536J11923_1010942	F002616	METPVSINTANWTSRAAIAARIAKCRSPQDWNEFTVVGDYHPPFGKASAQAKAARWLWQSYII*
JGI12536J11923_101141	JGI12536J11923_1011411	F006756	AEQRPAARRSQAQRRFLDFLDGLCAPDVAEGYLRGVADSDRALSRQLNELLELIRQYGPEAVAGALAKAYTARAFGADYIANILRQQQTPRRPQPPLRLRDPRLNELATDPLSLLAYDAFILESGKESDDSARETGSTEPVDDEPST*
JGI12536J11923_101276	JGI12536J11923_1012761	F003090	MEKMTVIDYKGYRIEVGPVGKGWRASIFSPGSIRPWPNSPANLEKSSAEELVAEAKRIIDVRLGPRRL*
JGI12536J11923_101546	JGI12536J11923_1015461	F062953	TPAGVTGNGDVRSLGDNVTSILGSAVNARADTATASITAVGGQQSGTGQPR*
JGI12536J11923_101562	JGI12536J11923_1015621	F027165	DEIHENLERMRREREAYEDALVIVRQFNARLSAKKTAWFWPTIGAALASKHHWLIIACDACDTVIDLDLTVKRRDADATIRVALNDVRCPRCNGHGRTRIVGLSRYPSI*
JGI12536J11923_102228	JGI12536J11923_1022281	F012657	LLWKSGHNRSFVNQKGRDLLVCSRDFETKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR*
JGI12536J11923_102420	JGI12536J11923_1024201	F005929	MRENMSLLSFWGLVFSLIAVTLFVVIYSYQKSKYANRNIVGDLRQRSVDVYLAAKTPEAESDSKMFRAASNEIERLRAETRVLFWLIIAMNTAVIIIFILAYRYF*
JGI12536J11923_102434	JGI12536J11923_1024341	F011271	MGKNGGRRGDRRARIDFQLEPKERQALKLAEIREALVAAGYDTTAKQAAVLGVCRSTAWVLLNRDKRAGPSAKVIKRILSSPQVPARARRKVEQYVEQKARGLYGHCESATRTFGNQFQHL*
JGI12536J11923_102508	JGI12536J11923_1025082	F083637	MKKVFTVICSVLVALSLAGCGWFVPGKGKAPIIGKGKAPAPVVTKG*
JGI12536J11923_102771	JGI12536J11923_1027712	F031318	MRTTTIATVAVVVLALLIVAKSRTVGLTEATGNPQQNTVSIYDLSGGHPNMKNLTVQQPPWP*
JGI12536J11923_103180	JGI12536J11923_1031801	F019273	MIHKVKINKKYPFKQMQPGERFKLKDDXIRSAQKMAWYYRTRCKRPINVVIAKGDDGYHCQRID*
JGI12536J11923_103609	JGI12536J11923_1036092	F034501	MHDTHKQDYLAQAERHIAKAQERIARQKGIIDKLVQAGQETDCATSMLHALETCLHAFEQHREMIFERCKN*
JGI12536J11923_103630	JGI12536J11923_1036301	F065994	MPVERRGQVTDVGSEPTGNRRSSNSRREAAAFVRWHEPDDARVSX
JGI12536J11923_103964	JGI12536J11923_1039642	F022958	MNYLLQVAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH*
JGI12536J11923_103984	JGI12536J11923_1039841	F063348	GSNAVGVVGSFVVNIEAHRARYAKKLEAIRAGADAATVFLADEVGREIDALATKEIKRVRDAGRVEFEPGAADHQIPLEIHKIGLSDNQLEVIMRTAEPLAEEKCQEFLQRVAAILPMRGQISDDDVSVAVHRALSDIIRNSAVWKEWNQNSPPTLQDGQVSDAA*

Scaffold ID

Protein ID

Family

Sequence

JGI12536J11923_100271

JGI12536J11923_1002713

F019273

MIYRVRTNKKYPFKQMQPGETFKLNDEDVRSAQKMAWSYRTRCKRPIRIIIAKSDDGFHCHRID*

JGI12536J11923_100394

JGI12536J11923_1003942

F010450

MNSVPFSRDFVAAGASAYRPRGEPGLAQRGLLRRVVDAIALSHQRAVERDIARVLGLSYPGGRLTDEIERRLFEHLNGDR

JGI12536J11923_100483

JGI12536J11923_1004832

F012657

PEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG*

JGI12536J11923_101094

JGI12536J11923_1010942

F002616

METPVSINTANWTSRAAIAARIAKCRSPQDWNEFTVVGDYHPPFGKASAQAKAARWLWQSYII*

JGI12536J11923_101141

JGI12536J11923_1011411

F006756

AEQRPAARRSQAQRRFLDFLDGLCAPDVAEGYLRGVADSDRALSRQLNELLELIRQYGPEAVAGALAKAYTARAFGADYIANILRQQQTPRRPQPPLRLRDPRLNELATDPLSLLAYDAFILESGKESDDSARETGSTEPVDDEPST*

JGI12536J11923_101276

JGI12536J11923_1012761

F003090

MEKMTVIDYKGYRIEVGPVGKGWRASIFSPGSIRPWPNSPANLEKSSAEELVAEAKRIIDVRLGPRRL*

JGI12536J11923_101546

JGI12536J11923_1015461

F062953

TPAGVTGNGDVRSLGDNVTSILGSAVNARADTATASITAVGGQQSGTGQPR*

JGI12536J11923_101562

JGI12536J11923_1015621

F027165

DEIHENLERMRREREAYEDALVIVRQFNARLSAKKTAWFWPTIGAALASKHHWLIIACDACDTVIDLDLTVKRRDADATIRVALNDVRCPRCNGHGRTRIVGLSRYPSI*

JGI12536J11923_102228

JGI12536J11923_1022281

F012657

LLWKSGHNRSFVNQKGRDLLVCSRDFETKAAASRIIAMAWLKIIEKKRLLSASPVMIAASLHQMAEKYDPQVAPTTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR*

JGI12536J11923_102420

JGI12536J11923_1024201

F005929

MRENMSLLSFWGLVFSLIAVTLFVVIYSYQKSKYANRNIVGDLRQRSVDVYLAAKTPEAESDSKMFRAASNEIERLRAETRVLFWLIIAMNTAVIIIFILAYRYF*

JGI12536J11923_102434

JGI12536J11923_1024341

F011271

MGKNGGRRGDRRARIDFQLEPKERQALKLAEIREALVAAGYDTTAKQAAVLGVCRSTAWVLLNRDKRAGPSAKVIKRILSSPQVPARARRKVEQYVEQKARGLYGHCESATRTFGNQFQHL*

JGI12536J11923_102508

JGI12536J11923_1025082

F083637

MKKVFTVICSVLVALSLAGCGWFVPGKGKAPIIGKGKAPAPVVTKG*

JGI12536J11923_102771

JGI12536J11923_1027712

F031318

MRTTTIATVAVVVLALLIVAKSRTVGLTEATGNPQQNTVSIYDLSGGHPNMKNLTVQQPPWP*

JGI12536J11923_103180

JGI12536J11923_1031801

F019273

MIHKVKINKKYPFKQMQPGERFKLKDDXIRSAQKMAWYYRTRCKRPINVVIAKGDDGYHCQRID*

JGI12536J11923_103609

JGI12536J11923_1036092

F034501

MHDTHKQDYLAQAERHIAKAQERIARQKGIIDKLVQAGQETDCATSMLHALETCLHAFEQHREMIFERCKN*

JGI12536J11923_103630

JGI12536J11923_1036301

F065994

MPVERRGQVTDVGSEPTGNRRSSNSRREAAAFVRWHEPDDARVSX

JGI12536J11923_103964

JGI12536J11923_1039642

F022958

MNYLLQVAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH*

JGI12536J11923_103984

JGI12536J11923_1039841

F063348

GSNAVGVVGSFVVNIEAHRARYAKKLEAIRAGADAATVFLADEVGREIDALATKEIKRVRDAGRVEFEPGAADHQIPLEIHKIGLSDNQLEVIMRTAEPLAEEKCQEFLQRVAAILPMRGQISDDDVSVAVHRALSDIIRNSAVWKEWNQNSPPTLQDGQVSDAA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000699: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 79

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences