Metagenome / Metatranscriptome Family F083637

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083637
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	44 residues
Representative Sequence	MKKILVVICSVTLALGLAGCGWAGKGKAPIIGKGKAPAPVVTKG
Number of Associated Samples	85
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.91 %
% of genes near scaffold ends (potentially truncated)	54.46 %
% of genes from short scaffolds (< 2000 bps)	64.29 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.071 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (59.821 % of family members)
Environment Ontology (ENVO)	Unclassified (60.714 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (78.571 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 38.64% β-sheet: 0.00% Coil/Unstructured: 61.36%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF03734	YkuD	10.71
PF17158	MASE4	3.57
PF13505	OMP_b-brl	3.57
PF00497	SBP_bac_3	2.68
PF16868	NMT1_3	2.68
PF02518	HATPase_c	1.79
PF00515	TPR_1	1.79
PF01699	Na_Ca_ex	1.79
PF05128	DUF697	1.79
PF13467	RHH_4	1.79
PF06411	HdeA	1.79
PF01144	CoA_trans	1.79
PF04317	DUF463	0.89
PF04205	FMN_bind	0.89
PF00291	PALP	0.89
PF11272	DUF3072	0.89
PF13414	TPR_11	0.89
PF14559	TPR_19	0.89
PF04191	PEMT	0.89
PF04226	Transgly_assoc	0.89
PF13180	PDZ_2	0.89
PF01522	Polysacc_deac_1	0.89
PF13580	SIS_2	0.89
PF00072	Response_reg	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	10.71
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	10.71
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	1.79
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	1.79
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	1.79
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	1.79
COG3768	Uncharacterized membrane protein YcjF, UPF0283 family	Function unknown [S]	1.79
COG4670	Acyl CoA:acetate/3-ketoacid CoA transferase	Lipid transport and metabolism [I]	1.79
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.89
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.89
COG3106	Ras-like GTP-binding stress-induced protein YcjX, DUF463 family	Signal transduction mechanisms [T]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.07 %
Unclassified	root	N/A	33.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.07 %
Unclassified	root	N/A	33.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.07 %
Unclassified	root	N/A	33.93 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.04 %
Unclassified	root	N/A	33.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	56.25 %
Unclassified	root	N/A	33.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.89 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	47.32 %
Unclassified	root	N/A	33.93 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.79 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	11.61 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	10.71 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	5.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.89 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.89 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.93 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	10.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.25 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	5.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.89 %
unclassified Eubacteriales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales	0.89 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.93 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	10.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.25 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	4.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Clostridiales bacterium VE202-15	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium VE202-15	0.89 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.89 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.89 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.93 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	10.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.25 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	4.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.79 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.89 %
Clostridiales bacterium VE202-15	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium VE202-15	0.89 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.89 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000664\|JGI12418J11929_10075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1348	Open in IMG/M
3300000667\|JGI12495J11915_100790	Not Available	507	Open in IMG/M
3300000676\|JGI12333J11928_100720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	811	Open in IMG/M
3300000676\|JGI12333J11928_102005	Not Available	522	Open in IMG/M
3300000679\|JGI12586J11914_100577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	752	Open in IMG/M
3300000693\|JGI12545J11889_100779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	795	Open in IMG/M
3300000699\|JGI12536J11923_102508	Not Available	648	Open in IMG/M
3300000716\|JGI12331J11884_100016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3733	Open in IMG/M
3300000716\|JGI12331J11884_102767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300000721\|JGI12410J11868_102264	Not Available	701	Open in IMG/M
3300000723\|JGI12372J11909_100062	All Organisms → cellular organisms → Bacteria → Proteobacteria	2989	Open in IMG/M
3300000723\|JGI12372J11909_105279	Not Available	619	Open in IMG/M
3300000727\|JGI12417J11878_1010358	Not Available	575	Open in IMG/M
3300000729\|JGI12371J11900_1000487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2577	Open in IMG/M
3300000731\|JGI12381J11899_1011860	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300000733\|JGI12408J11912_1000063	All Organisms → cellular organisms → Bacteria	9646	Open in IMG/M
3300000733\|JGI12408J11912_1002769	Not Available	1724	Open in IMG/M
3300000733\|JGI12408J11912_1013685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	603	Open in IMG/M
3300000734\|JGI12535J11911_1004721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1348	Open in IMG/M
3300000909\|JGI12488J12863_100017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5112	Open in IMG/M
3300001075\|JGI12453J13212_100083	All Organisms → cellular organisms → Bacteria	2394	Open in IMG/M
3300001075\|JGI12453J13212_101857	Not Available	806	Open in IMG/M
3300002568\|C688J35102_120865649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1895	Open in IMG/M
3300003324\|soilH2_10218136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2358	Open in IMG/M
3300003324\|soilH2_10277487	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300003988\|Ga0055475_10001387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5026	Open in IMG/M
3300004064\|Ga0055479_10079604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1153	Open in IMG/M
3300005995\|Ga0066790_10417261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium VE202-15	574	Open in IMG/M
3300009029\|Ga0066793_10501882	Not Available	694	Open in IMG/M
3300009029\|Ga0066793_10719166	Not Available	567	Open in IMG/M
3300010046\|Ga0126384_10000225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	29133	Open in IMG/M
3300012212\|Ga0150985_107355276	Not Available	500	Open in IMG/M
3300012469\|Ga0150984_114014087	Not Available	867	Open in IMG/M
3300012931\|Ga0153915_12354286	Not Available	623	Open in IMG/M
3300014201\|Ga0181537_11074380	Not Available	544	Open in IMG/M
3300016270\|Ga0182036_10009578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5090	Open in IMG/M
3300016341\|Ga0182035_10463799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1076	Open in IMG/M
3300016387\|Ga0182040_10171632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1568	Open in IMG/M
3300016422\|Ga0182039_10028369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3560	Open in IMG/M
3300016445\|Ga0182038_10579275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	966	Open in IMG/M
3300017974\|Ga0187777_11098213	Not Available	579	Open in IMG/M
3300018014\|Ga0187860_1051506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2076	Open in IMG/M
3300018058\|Ga0187766_10744092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	680	Open in IMG/M
3300019240\|Ga0181510_1152281	Not Available	613	Open in IMG/M
3300019260\|Ga0181506_1347786	Not Available	578	Open in IMG/M
3300025797\|Ga0210062_1001579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6773	Open in IMG/M
3300026783\|Ga0207778_101418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1732	Open in IMG/M
3300026800\|Ga0207742_102046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1988	Open in IMG/M
3300026804\|Ga0207737_101238	Not Available	1691	Open in IMG/M
3300026804\|Ga0207737_103677	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300026809\|Ga0207820_100005	All Organisms → cellular organisms → Bacteria	17969	Open in IMG/M
3300026817\|Ga0207775_100001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	39145	Open in IMG/M
3300026817\|Ga0207775_100269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6268	Open in IMG/M
3300026817\|Ga0207775_100494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4089	Open in IMG/M
3300026817\|Ga0207775_113070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	635	Open in IMG/M
3300026819\|Ga0207765_100127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	11119	Open in IMG/M
3300026819\|Ga0207765_102611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1789	Open in IMG/M
3300026819\|Ga0207765_109819	Not Available	789	Open in IMG/M
3300026823\|Ga0207759_110747	Not Available	733	Open in IMG/M
3300026823\|Ga0207759_113752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	637	Open in IMG/M
3300026833\|Ga0207728_123544	Not Available	544	Open in IMG/M
3300026839\|Ga0207764_126133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	508	Open in IMG/M
3300026845\|Ga0207760_117416	Not Available	581	Open in IMG/M
3300026847\|Ga0207802_1000037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16452	Open in IMG/M
3300026849\|Ga0207804_101058	Not Available	3123	Open in IMG/M
3300026860\|Ga0207823_100044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16561	Open in IMG/M
3300026862\|Ga0207724_1001966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2085	Open in IMG/M
3300026868\|Ga0207818_1001308	Not Available	2548	Open in IMG/M
3300026868\|Ga0207818_1010888	Not Available	830	Open in IMG/M
3300026872\|Ga0207785_1022577	Not Available	550	Open in IMG/M
3300026898\|Ga0207788_1002387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2039	Open in IMG/M
3300026928\|Ga0207779_1004533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2042	Open in IMG/M
3300026928\|Ga0207779_1039911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	538	Open in IMG/M
3300026979\|Ga0207817_1002091	Not Available	2464	Open in IMG/M
3300026979\|Ga0207817_1027501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	607	Open in IMG/M
3300026981\|Ga0207822_1004561	Not Available	1628	Open in IMG/M
3300026988\|Ga0207834_1030836	Not Available	626	Open in IMG/M
3300027000\|Ga0207803_1000068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17911	Open in IMG/M
3300027011\|Ga0207740_1021250	Not Available	852	Open in IMG/M
3300027024\|Ga0207819_1000002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	51922	Open in IMG/M
3300027024\|Ga0207819_1005145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2069	Open in IMG/M
3300027035\|Ga0207776_1007527	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300027063\|Ga0207762_1000888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6766	Open in IMG/M
3300027330\|Ga0207777_1000301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13251	Open in IMG/M
3300027516\|Ga0207761_1007197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2659	Open in IMG/M
3300027680\|Ga0207826_1008486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2782	Open in IMG/M
3300027680\|Ga0207826_1044278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1236	Open in IMG/M
3300027680\|Ga0207826_1190652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	554	Open in IMG/M
3300027703\|Ga0207862_1000017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	37245	Open in IMG/M
3300027703\|Ga0207862_1171989	Not Available	646	Open in IMG/M
3300027915\|Ga0209069_10631961	Not Available	621	Open in IMG/M
3300031368\|Ga0307429_1003837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5977	Open in IMG/M
3300031546\|Ga0318538_10762245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	525	Open in IMG/M
3300031744\|Ga0306918_11372916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	542	Open in IMG/M
3300031771\|Ga0318546_10205921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1345	Open in IMG/M
3300031833\|Ga0310917_10284898	All Organisms → cellular organisms → Bacteria → Proteobacteria	1116	Open in IMG/M
3300031879\|Ga0306919_11473031	Not Available	513	Open in IMG/M
3300031910\|Ga0306923_10165326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2527	Open in IMG/M
3300031910\|Ga0306923_11179291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	820	Open in IMG/M
3300031912\|Ga0306921_11152251	Not Available	866	Open in IMG/M
3300031942\|Ga0310916_10057970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2988	Open in IMG/M
3300031942\|Ga0310916_10228876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1562	Open in IMG/M
3300031942\|Ga0310916_10488664	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300031947\|Ga0310909_10236799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1523	Open in IMG/M
3300031947\|Ga0310909_10831129	Not Available	762	Open in IMG/M
3300031959\|Ga0318530_10482327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	515	Open in IMG/M
3300031981\|Ga0318531_10518067	Not Available	540	Open in IMG/M
3300032059\|Ga0318533_10589646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	816	Open in IMG/M
3300032160\|Ga0311301_10389951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2142	Open in IMG/M
3300032261\|Ga0306920_103679603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	563	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.21%
Host-Associated	Host-Associated	1.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.29%
Aquatic	Environmental → Aquatic	8.93%
Plants	Host-Associated → Plants	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.29%
Freshwater	Environmental → Aquatic → Freshwater	4.46%
Marine	Environmental → Aquatic → Marine	3.57%
Sediment	Environmental → Aquatic → Sediment	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	61.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.46%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.46%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.68%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	59.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.64%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.57%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.68%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	59.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.68%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.68%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.79%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.79%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.89%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000664	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 62	Environmental	Open in IMG/M
3300000667	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 43	Environmental	Open in IMG/M
3300000676	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 27	Environmental	Open in IMG/M
3300000679	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23	Environmental	Open in IMG/M
3300000693	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3	Environmental	Open in IMG/M
3300000699	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 79	Environmental	Open in IMG/M
3300000716	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 66	Environmental	Open in IMG/M
3300000721	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41	Environmental	Open in IMG/M
3300000723	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 72	Environmental	Open in IMG/M
3300000727	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 5	Environmental	Open in IMG/M
3300000729	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35	Environmental	Open in IMG/M
3300000731	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34	Environmental	Open in IMG/M
3300000733	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80	Environmental	Open in IMG/M
3300000734	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81	Environmental	Open in IMG/M
3300000909	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37	Environmental	Open in IMG/M
3300001075	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 63	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003988	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordB_D2	Environmental	Open in IMG/M
3300004064	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D1	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300019240	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019260	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025797	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_CordA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026783	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 36 (SPAdes)	Environmental	Open in IMG/M
3300026800	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 43 (SPAdes)	Environmental	Open in IMG/M
3300026804	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 2 (SPAdes)	Environmental	Open in IMG/M
3300026809	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 47 (SPAdes)	Environmental	Open in IMG/M
3300026817	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 17 (SPAdes)	Environmental	Open in IMG/M
3300026819	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 59 (SPAdes)	Environmental	Open in IMG/M
3300026823	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 19 (SPAdes)	Environmental	Open in IMG/M
3300026833	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)	Environmental	Open in IMG/M
3300026839	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 52 (SPAdes)	Environmental	Open in IMG/M
3300026845	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24 (SPAdes)	Environmental	Open in IMG/M
3300026847	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 (SPAdes)	Environmental	Open in IMG/M
3300026849	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46 (SPAdes)	Environmental	Open in IMG/M
3300026860	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 70 (SPAdes)	Environmental	Open in IMG/M
3300026862	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 31 (SPAdes)	Environmental	Open in IMG/M
3300026868	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 32 (SPAdes)	Environmental	Open in IMG/M
3300026872	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74 (SPAdes)	Environmental	Open in IMG/M
3300026898	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 79 (SPAdes)	Environmental	Open in IMG/M
3300026928	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 44 (SPAdes)	Environmental	Open in IMG/M
3300026979	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes)	Environmental	Open in IMG/M
3300026981	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 67 (SPAdes)	Environmental	Open in IMG/M
3300026988	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 5 (SPAdes)	Environmental	Open in IMG/M
3300027000	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41 (SPAdes)	Environmental	Open in IMG/M
3300027011	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29 (SPAdes)	Environmental	Open in IMG/M
3300027024	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42 (SPAdes)	Environmental	Open in IMG/M
3300027035	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)	Environmental	Open in IMG/M
3300027063	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031368	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-230	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12418J11929_100751	3300000664	Tropical Forest Soil	ICSVTLALGLAGCGWAGKTPIIGKGKAPAPVVTKG*
JGI12495J11915_1007902	3300000667	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCGWAGKAPIIGKGKAPAPVVTKG*
JGI12333J11928_1007201	3300000676	Tropical Forest Soil	LMKKILVVICSVTLALGLAGCGWAGKTPIIGKGKAPAPVVTKG*
JGI12333J11928_1020052	3300000676	Tropical Forest Soil	LXXXRGVLMKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTKG*
JGI12586J11914_1005771	3300000679	Tropical Forest Soil	VVICSVTLALGLAGCGWAGKTPIIGKGKAPAPVVTKG*
JGI12545J11889_1007791	3300000693	Tropical Forest Soil	VVXCSXVLALSLAGCGWGPWAGKGPIIGKGKAPAPVVTKG*
JGI12536J11923_1025082	3300000699	Tropical Forest Soil	MKKVFTVICSVLVALSLAGCGWFVPGKGKAPIIGKGKAPAPVVTKG*
JGI12331J11884_1000164	3300000716	Tropical Forest Soil	MKKMLVVICSLVLALSLAGCGWGPWAGKGKAPIIGKGKAPAPVVTKG*
JGI12331J11884_1027671	3300000716	Tropical Forest Soil	MKKVFTVICSVLVALSLAGCGWFVPGKGKAPIIGKGKAP
JGI12410J11868_1022641	3300000721	Tropical Forest Soil	VXCSVLLALSLAGCGWWAPGKGKAPIIGKGKAPAPVVTKG*
JGI12372J11909_1000623	3300000723	Tropical Forest Soil	MKKILVVICSVTLALGLAGCGWAGKTPIIGKGKAPAPVVTKGTS
JGI12372J11909_1052792	3300000723	Tropical Forest Soil	MKKVFTVICSVLVALSLAGCGWFVPGKGKAPIIGKGKAPA
JGI12417J11878_10103582	3300000727	Tropical Forest Soil	MKKMLVVICSLVLALSLAGCGWGPWAGKGKAPIIGKGK
JGI12371J11900_10004872	3300000729	Tropical Forest Soil	MKKVLVILCSVIVSASLAGCVAGKAPWIGKGKAPAPVVTKG*
JGI12381J11899_10118602	3300000731	Tropical Forest Soil	MKKFLVVICSAVLALGLAGCAGKGKTPIGKGKAPAPVVTKG*TN
JGI12408J11912_10000637	3300000733	Tropical Forest Soil	VDSLFKQGHLMKKMLVVICSLVLALSLAGCGWGPWAGKGKAPIIGKGKAPAPVVTKG*
JGI12408J11912_10027695	3300000733	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCGWAGKAPIIGKGKAPAPV
JGI12408J11912_10136851	3300000733	Tropical Forest Soil	VICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTKG*
JGI12535J11911_10047212	3300000734	Tropical Forest Soil	MKRTLVVICAVMLALGIAGCGWVGKTPIIGKGKAPAPVVTKG*
JGI12488J12863_1000177	3300000909	Tropical Forest Soil	MKKMLVVICSLVLALSLAGCGWGPWAGKGPIIGKGKAPAPVVTKG*
JGI12453J13212_1000831	3300001075	Tropical Forest Soil	MKKMLVVICSLVLALSLAGCGWGPWAGKGKAPIIGKGKAPAPVV
JGI12453J13212_1018572	3300001075	Tropical Forest Soil	RALRLTIPWGGIMKKVLVILCSVIVSASLAGCVAGKAPWIGKGKAPAPVVTKG*
C688J35102_1208656494	3300002568	Soil	MKKVLVILCSVVLAVGLAGCVGKGKAPIGKGKAPAPVVTKG*
soilH2_102181361	3300003324	Sugarcane Root And Bulk Soil	MKKVLVILCSVVLAVGLAGCAGKGKAPIGKGKAPAPVVTKG*
soilH2_102774871	3300003324	Sugarcane Root And Bulk Soil	NPLGWHMKKVLVILCSVVLAVGLAGCVGKGKAPIGKGKAPAPVVTKG*
Ga0055475_100013876	3300003988	Natural And Restored Wetlands	MKMFFVIICSAVLALGLAGCAGKGKVPIGKGKAPAPVVTKG*
Ga0055479_100796042	3300004064	Natural And Restored Wetlands	MFFVIICSAVLALGLAGCAGKGKVPIGKGKAPAPVVTKG*
Ga0066790_104172611	3300005995	Soil	MNKFLVVICSVVLALGLAGCAGKGKTPIGKGKAPAPVVTKG*
Ga0066793_105018822	3300009029	Prmafrost Soil	MKKFLIVICSVVLAIGLAGCAGKGKTPIGKGKAPAPVVTRG*
Ga0066793_107191661	3300009029	Prmafrost Soil	MNKFLVVICSVVLALGLAGCAGKGKTPIGKGKAPAPVVTRG*
Ga0126384_1000022520	3300010046	Tropical Forest Soil	MKKFLVVLCSAILAFGLAGCWGKGKAPYGKGKAPAPVVTKG*
Ga0150985_1073552761	3300012212	Avena Fatua Rhizosphere	IPWGGIMKKVLVILCSVVLAVGLAGCAGKGKAPIGKGKAPAPVVTKG*
Ga0150984_1140140872	3300012469	Avena Fatua Rhizosphere	WHMKKVLVILCSVVLAVGLAGCVGKGKAPIGKGKAPAPVVTKG*
Ga0153915_123542861	3300012931	Freshwater Wetlands	MKKFLVVICSAVLALGLAGCAGKGKTPIGKGKAPAPVVTKG*
Ga0181537_110743801	3300014201	Bog	MHVDLANRRGLGIMKKLLIITCSVMLALSVGGCVGKGKAPIGKGKAPAPIVTKG*
Ga0182036_100095787	3300016270	Soil	VDSLFKQGHLMKKMLVVICSLVLALSLAGCGWGPWGGKGKAPIIGKGKAPAPVVTKG
Ga0182035_104637992	3300016341	Soil	MKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPA
Ga0182040_101716322	3300016387	Soil	VDLLFGRGVLMKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAP
Ga0182039_100283695	3300016422	Soil	MKKILVVICSVMLALSLAGCGWGPFAGKGKAPIIGKGKAPAPVVT
Ga0182038_105792752	3300016445	Soil	VDLLFGRGVLMKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVT
Ga0187777_110982131	3300017974	Tropical Peatland	MKKMLVVVCSLVLALGLAGCAGKGKAPIIGKGKAPAPVVTKG
Ga0187860_10515061	3300018014	Peatland	MPGFTKLTGMGAMNKFLAIVCSVLLALSVAGCAGKGKAPIGKGKAPVPVVTKG
Ga0187766_107440922	3300018058	Tropical Peatland	MKRTLVVICTVMLALSLAGCGWAGKGKAPIIGKGKAPAPVVTKG
Ga0181510_11522811	3300019240	Peatland	VDLANRRGLGIMKKLLIITCSVMLALSVGGCVGKGKAPIGKGKAPAPIVTKG
Ga0181506_13477862	3300019260	Peatland	GLGIMKKLLIITCSVMLALSVGGCVGKGKAPIGKGKAPAPIVTKG
Ga0210062_10015795	3300025797	Natural And Restored Wetlands	MKMFFVIICSAVLALGLAGCAGKGKVPIGKGKAPAPVVTKG
Ga0207693_103517083	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GLIVQLQGGPMKKFLIAVCSIVLAIGVSGCVGKAPVGKGKAPAPVVTRG
Ga0207778_1014182	3300026783	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTKG
Ga0207742_1020461	3300026800	Tropical Forest Soil	VDSLFKQGHLMKKMLVVICSLVLALSLAGCGWGPWGKGKAPIIGKGKAPAPVVTKG
Ga0207737_1012382	3300026804	Tropical Forest Soil	VDLLFGRGVLMKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTKG
Ga0207737_1036771	3300026804	Tropical Forest Soil	VDSLFKQGHLMKKMLVVICSLVLALGLAGCGWAGKAPIIGKGKAPA
Ga0207820_10000521	3300026809	Tropical Forest Soil	VDSLFKQGHLMKKMLVVICSLVLALSLAGCGWGPWAGKGKAPIIGKGKAPAPVVTKG
Ga0207775_10000127	3300026817	Tropical Forest Soil	MKKILVVICSVTLALGLAGCGWAGKTPIIGKGKAPAPVVTKG
Ga0207775_1002693	3300026817	Tropical Forest Soil	VDSLFKQGHLMKKMLVVICSLVLALSLAGCGWGPWAGKGPIIGKGKAPAPVVTKG
Ga0207775_1004941	3300026817	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAP
Ga0207775_1130701	3300026817	Tropical Forest Soil	VVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTKG
Ga0207765_1001277	3300026819	Tropical Forest Soil	MKKMLVVICSLVLALSLAGCGWGPWAGKGKAPIIGKGKAPAPVVTKG
Ga0207765_1026113	3300026819	Tropical Forest Soil	MKKVLVILCSVIVSASLAGCVAGKAPWIGKGKAPAPVVTKG
Ga0207765_1098192	3300026819	Tropical Forest Soil	VLTVVCSVLLALSLAGCAGKGKAPIIGKGKAPAPVVTKG
Ga0207759_1107471	3300026823	Tropical Forest Soil	SNIGALRLTIPWGGIMKKVLVILCSVIVSASLAGCVAGKAPWIGKGKAPAPVVTKG
Ga0207759_1137522	3300026823	Tropical Forest Soil	RGVLMKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTKG
Ga0207728_1235441	3300026833	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCDWAGWAGKGKAPIIGKGKAPAPVVT
Ga0207764_1261332	3300026839	Tropical Forest Soil	QIQDIAIVDFIWTGVLMKRTLVVICAVMLALGLAGCGWAGKAPIIGKGKAPAPVVTKG
Ga0207760_1174161	3300026845	Tropical Forest Soil	MKKILVVICSAVLALGLAGCAGKGKTPIGKGKAPAPVVTKG
Ga0207802_10000371	3300026847	Tropical Forest Soil	WTGVLMKRTLVVICAVMLALGLAGCGWAGKAPIIGKGKAPAPVVTKG
Ga0207804_1010582	3300026849	Tropical Forest Soil	VDFIWTGVLMKRTLVVICAVMLALGLAGCGWAGKAPIIGKGKAPAPVVTKG
Ga0207823_10004420	3300026860	Tropical Forest Soil	MKKILVVICSVTLALGLAGCGWAGKTPIIGKGKAP
Ga0207724_10019662	3300026862	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCGWAGKAPIIGKGKAPAPVVTKG
Ga0207818_10013083	3300026868	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCGWAGKAPIIGKGKAPAPVV
Ga0207818_10108882	3300026868	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCDWAGWAGKGKAPIIGKG
Ga0207785_10225772	3300026872	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVT
Ga0207788_10023873	3300026898	Tropical Forest Soil	VLMKRTLVVICAVMLALGLAGCGWAGKAPIIGKGKAPAPVVTKG
Ga0207779_10045333	3300026928	Tropical Forest Soil	GVLMKRTLVVICAVMLALGLAGCGWAGKAPIIGKGKAPAPVVTKG
Ga0207779_10399111	3300026928	Tropical Forest Soil	RTLVVICTVMLALGLAGCVGKAPIIGKGKAPAPVVTKG
Ga0207817_10020914	3300026979	Tropical Forest Soil	VDFIWTGVLMKRTLVVICAVMLALGLAGCGWAGKAPIIGKGKAPAP
Ga0207817_10275011	3300026979	Tropical Forest Soil	AVMLALGLAACDWAGWAGKGKAPIIGKGKAPAPVVTKG
Ga0207822_10045611	3300026981	Tropical Forest Soil	SVLLALSLAGCGWFTPGKGKAPIIGKGKAPAPVVTKG
Ga0207834_10308361	3300026988	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCDWAGWAGKGKAPIIGK
Ga0207803_100006818	3300027000	Tropical Forest Soil	VDSLFKQGHLMKKMLVVICSLVLALGLAGCGWAGKGKAPIIGKGKAPAPVVTKG
Ga0207740_10212501	3300027011	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCDWAGWAGKGKAPIIGKGKA
Ga0207819_100000249	3300027024	Tropical Forest Soil	MKKMLVVICSLVLALSLAGCGWGPWGKGKAPIIGKGKAPAPVVTKG
Ga0207819_10051451	3300027024	Tropical Forest Soil	IAIVDFIWTGVLMKRTLVVICAVMLALGLAGCGWAGKAPIIGKGKAPAPVVTKG
Ga0207776_10075271	3300027035	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTK
Ga0207762_10008883	3300027063	Tropical Forest Soil	MKKMLVVICSLVLALSLAGCGWGPWAGKGPIIGKGKAPAPVVTKG
Ga0207777_10003011	3300027330	Tropical Forest Soil	ALRLTIPWGGIMKKVLVILCSVIVSASLAGCVAGKAPWIGKGKAPAPVVTKG
Ga0207761_10071971	3300027516	Tropical Forest Soil	LERGVLMKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTKG
Ga0207826_10084864	3300027680	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCDWAGWAGKGKAPIIGKGKAPAPVVTKG
Ga0207826_10442781	3300027680	Tropical Forest Soil	MKRTLVVICAVMLALGIAGCGWVGKTPIIGKGKAPAPVVTKG
Ga0207826_11351802	3300027680	Tropical Forest Soil	NPIYLKQLRPLMKKFLVVICSAVLALGLAGCAGKGKTPIGKGKAPAPVVTKG
Ga0207826_11906521	3300027680	Tropical Forest Soil	GVLMKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTKG
Ga0207862_100001739	3300027703	Tropical Forest Soil	RLTIPWGGIMKKVLVILCSVIVSASLAGCVAGKAPWIGKGKAPAPVVTKG
Ga0207862_11719891	3300027703	Tropical Forest Soil	MKRTLVVICAVMLALGLAGCGWVGKTPIIGKGKAPAPVVTKG
Ga0209069_106319611	3300027915	Watersheds	MEKFLIVVCSVVLALGLAGCAGKGKTPIGKGKAPAPVVTKG
Ga0307429_10038375	3300031368	Salt Marsh	MKTFLVIICSSVLALGVAGCVGKAPIGKGKAPAPVVTKG
Ga0318538_107622451	3300031546	Soil	SVLLALSLAGCGWWAPGKGKAPIIGKGKAPAPVVTKG
Ga0306918_113729161	3300031744	Soil	KKILVVICSVTLALGLAGCGWAGKGKAPIIGKGKAPAPVVTKG
Ga0318546_102059212	3300031771	Soil	LMKKMLVVICSLVLALSLAGCGWGPFGKGKAPIIGKGKAPAPVVTKG
Ga0310917_102848981	3300031833	Soil	MKKILVLICSVTLALSLAGCGWGPFAGKGKAPIIGKGKAPAPVVTKG
Ga0306919_114730311	3300031879	Soil	MKKILVVICSVTLALGLAGCGWAGKGKAPIIGKGKAPAPVVTKG
Ga0306923_101653264	3300031910	Soil	QGHLMKKMLVVICSLVLALSLAGCGWGPFGKGKAPIIGKGKAPAPVVTKG
Ga0306923_111792912	3300031910	Soil	VDLLFGRGVLMKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTK
Ga0306921_111522511	3300031912	Soil	VDSLFKQGHLMKKMLVVICSLVLALSLAGCGWGPFGKGKAPIIGKGKAPAPVVTKG
Ga0310916_100579704	3300031942	Soil	LMKRTLVVICAVMLALGLAGCGWAGKGKAPIIGKGKAPAPVVTKG
Ga0310916_102288761	3300031942	Soil	MKKVFTVVCSVLLALSLAGCGWFTPGKGKAPIIGKGKAPAPVVTKG
Ga0310916_104886643	3300031942	Soil	MRKVFTVVCSVLVALSLAGCGWFTPGKGKAPIIGKGKAPAPVVTK
Ga0310909_102367992	3300031947	Soil	MKRTLVVICAAMLALGLAGCGWVGKTPIIGKGKAPAPVVTKG
Ga0310909_108311293	3300031947	Soil	MKKMLVVICSLVLALSLAGCGWGPFAGKGKAPIIGKGKAPAPVVTKG
Ga0318530_104823271	3300031959	Soil	IVDLLFGRGVLMKRTLVVICAVMLALGLAGCGWAGKTPIIGKGKAPAPVVTKG
Ga0318531_105180671	3300031981	Soil	MKKILVLICSVTLALGLAGCGWAGKGKAPIIGKGKAPAPVVTKG
Ga0318533_105896461	3300032059	Soil	VDLLFGRGVLMKRTLVVICAVMLALGLAGCGWAGKAPIIGKGKAPAPV
Ga0311301_103899511	3300032160	Peatlands Soil	LVIVVSLVLALGVAGCAGKGKAPIGKGKAPAPVVTKG
Ga0306920_1036796031	3300032261	Soil	RRGALMKKILVLICSVTLALSLAGCGWGPFAGKGKAPIIGKGKAPAPVVTKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083637

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences