3300000689: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 76

Overview

Basic Information

• IMG/M Taxon OID: 3300000689
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0075432 | Gp0054380 | Ga0001999
• Sample Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 76
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6886850
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → tropical forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007495	Metagenome / Metatranscriptome	350	Y
F010450	Metagenome / Metatranscriptome	303	Y
F014124	Metagenome / Metatranscriptome	265	Y
F014442	Metagenome / Metatranscriptome	263	Y
F019273	Metagenome	230	Y
F063348	Metagenome	129	N
F091204	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12538J11921_100443	All Organisms → cellular organisms → Bacteria → Proteobacteria	1158
JGI12538J11921_101171	Not Available	749
JGI12538J11921_102180	Not Available	559
JGI12538J11921_102259	Not Available	551
JGI12538J11921_102721	Not Available	508
JGI12538J11921_102789	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12538J11921_100443	JGI12538J11921_1004431	F010450	VNSVPFYRDFVAAGASAYRPRGEPGLAQRGLLRRVVDAIALSHQRAVERDIARVARRLGYSNPGGLLTDEIERRLFEHLTGDRGF
JGI12538J11921_101171	JGI12538J11921_1011713	F019273	MIYRVRTNKKYPFKQMQPGETFKLNDEDVRSAQKMAWYYRTRCKRPIRIIIAKSDDGYHCHRI
JGI12538J11921_102180	JGI12538J11921_1021802	F014442	QSTLNEEDDLLTLDISDEALETVGGNEVVGNFTLGACTGLSVCPA*
JGI12538J11921_102259	JGI12538J11921_1022591	F091204	MGWLRRISRSRHHGNMSARVIEFPGARESGGKPAHNVRSAQVSDEVVAPLTDFEIAAIESLGAIFQAGGTEAFNFAAKRQLFILASLIKRILGEDGLNELLTAAEWV*
JGI12538J11921_102400	JGI12538J11921_1024001	F014124	MNTPIERLQSALETLGLKAVEARLENLLEQASKKEPSYADFLDELLSCEVEARRTR
JGI12538J11921_102721	JGI12538J11921_1027211	F007495	QATTLKKLAEATYELDAFKSNLTRTEADKRIAMLTAKLKLLDEPPHTI*
JGI12538J11921_102789	JGI12538J11921_1027891	F063348	NVKKAEIEDLAFRFRDEVKAEILQHRGSNAXGVVGSFVVNIEAHRARYAKKLEAIRAGADAATVFLADEVGREIDALATKEIKRVRDAGRVEFEPGAADHQIPLEIHKIGLSDNQLEVIMRTAEPLAEEKCQEFLQRVAAILPMRGQISDDDVSVAVHRALSDIIHN