3300000680: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 32

Overview

Basic Information

• IMG/M Taxon OID: 3300000680
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0075432 | Gp0054812 | Ga0001955
• Sample Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 32
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5465220
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → tropical forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012657	Metagenome	278	Y
F031584	Metagenome / Metatranscriptome	182	Y
F088860	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12452J11691_100005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2859
JGI12452J11691_100062	All Organisms → cellular organisms → Bacteria	1549
JGI12452J11691_100928	Not Available	567

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12452J11691_100005	JGI12452J11691_1000051	F088860	MGPPLRSFAADAHDCIMVRVLGPTEYKVAARLNRARAGSPLIVI
JGI12452J11691_100062	JGI12452J11691_1000623	F031584	HPTGGMSTKGHVWTAPWQELSDASAALVGCGHVSGLLMRPM*
JGI12452J11691_100928	JGI12452J11691_1009281	F012657	PVMIAASLHQMAEKYDPQVAPXTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRNWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR*