Metagenome / Metatranscriptome Family F031584

Basic Information
Family ID	F031584
Family Type	Metagenome / Metatranscriptome
Number of Sequences	182
Average Sequence Length	41 residues
Representative Sequence	MSALGHVWTAPWQELSDVFAALVGCGHVSGLLMRLVWPLA
Number of Associated Samples	137
Number of Associated Scaffolds	182

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	59.12 %
% of genes near scaffold ends (potentially truncated)	96.70 %
% of genes from short scaffolds (< 2000 bps)	83.52 %
Associated GOLD sequencing projects	130
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Most Common Taxonomy
Group	Bacteria (76.923 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (20.879 % of family members)
Environment Ontology (ENVO)	Unclassified (34.066 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.341 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.76% β-sheet: 0.00% Coil/Unstructured: 63.24%
Feature Viewer

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Pfam ID	Name	% Frequency in 182 Family Scaffolds
PF02371	Transposase_20	14.84
PF04392	ABC_sub_bind	13.19
PF01451	LMWPc	1.10
PF00211	Guanylate_cyc	1.10
PF00144	Beta-lactamase	1.10
PF13185	GAF_2	1.10
PF13460	NAD_binding_10	1.10
PF03073	TspO_MBR	1.10
PF12697	Abhydrolase_6	1.10
PF01872	RibD_C	0.55
PF01717	Meth_synt_2	0.55
PF00413	Peptidase_M10	0.55
PF00999	Na_H_Exchanger	0.55
PF13936	HTH_38	0.55
PF04546	Sigma70_ner	0.55
PF13560	HTH_31	0.55
PF06762	LMF1	0.55
PF08031	BBE	0.55
PF01565	FAD_binding_4	0.55
PF00115	COX1	0.55
PF13515	FUSC_2	0.55
PF04002	RadC	0.55
PF09865	DUF2092	0.55
PF09851	SHOCT	0.55
PF13505	OMP_b-brl	0.55
PF03171	2OG-FeII_Oxy	0.55
PF13676	TIR_2	0.55
PF00884	Sulfatase	0.55
PF13924	Lipocalin_5	0.55
PF03466	LysR_substrate	0.55
PF00536	SAM_1	0.55
PF13419	HAD_2	0.55
PF03625	DUF302	0.55
PF00924	MS_channel	0.55
PF00903	Glyoxalase	0.55
PF12847	Methyltransf_18	0.55
PF01925	TauE	0.55
PF03976	PPK2	0.55
PF01557	FAA_hydrolase	0.55
PF14226	DIOX_N	0.55
PF07484	Collar	0.55
PF02275	CBAH	0.55
PF13561	adh_short_C2	0.55
PF13432	TPR_16	0.55
PF03734	YkuD	0.55
PF12680	SnoaL_2	0.55
PF00571	CBS	0.55
PF02566	OsmC	0.55
PF06100	MCRA	0.55
PF07345	DUF1476	0.55
PF03060	NMO	0.55
PF00805	Pentapeptide	0.55
PF12833	HTH_18	0.55
PF05545	FixQ	0.55
PF07647	SAM_2	0.55
PF13545	HTH_Crp_2	0.55
PF04134	DCC1-like	0.55
PF07045	DUF1330	0.55
PF13594	Obsolete Pfam Family	0.55
PF00230	MIP	0.55

COG ID	Name	Functional Category	% Frequency in 182 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	14.84
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	13.19
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.10
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.10
COG3476	Tryptophan-rich sensory protein TspO/CrtK (mitochondrial benzodiazepine receptor homolog)	Signal transduction mechanisms [T]	1.10
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.10
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.10
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.55
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.55
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	0.55
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.55
COG3049	Penicillin V acylase or related amidase, Ntn superfamily	Cell wall/membrane/envelope biogenesis [M]	0.55
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.55
COG5549	Predicted Zn-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.55
COG3439	Uncharacterized conserved protein, DUF302 family	Function unknown [S]	0.55
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.55
COG4716	Myosin-crossreactive antigen (function unknown)	Function unknown [S]	0.55
COG4736	Cbb3-type cytochrome oxidase, subunit 3	Energy production and conversion [C]	0.55
COG4927	Predicted choloylglycine hydrolase	General function prediction only [R]	0.55
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.55
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.55
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.55
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.55
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.55
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.55
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.55
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.55
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.55
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.55
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.55
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.55
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.55
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.55
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.55
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.55
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.55
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	0.55
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.55

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.92 %
Unclassified	root	N/A	23.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.92 %
Unclassified	root	N/A	23.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.92 %
Unclassified	root	N/A	23.08 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	45.60 %
Unclassified	root	N/A	23.08 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	1.10 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.55 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.55 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.55 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.71 %
Unclassified	root	N/A	23.08 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	1.10 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.10 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.55 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.55 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.08 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	21.98 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.30 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.10 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	1.10 %
Maricaulales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales	0.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.55 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.55 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.55 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.55 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.08 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	13.19 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.30 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.75 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.10 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	1.10 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.55 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.55 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.55 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.55 %
Maricaulaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae	0.55 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.55 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.55 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.08 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9.34 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.30 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	1.65 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	1.10 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	1.10 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.55 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.55 %
Maricaulis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis	0.55 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.55 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.55 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.55 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.55 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.55 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.30 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1.65 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.10 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.10 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	1.10 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.55 %
Bradyrhizobium icense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	0.55 %
Bradyrhizobium ivorense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium ivorense	0.55 %
unclassified Reyranella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella	0.55 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.55 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.55 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.55 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.55 %
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	0.55 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.55 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.55 %
Maricaulis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis	0.55 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.55 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.55 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.30 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1.65 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.10 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.10 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	1.10 %
Reyranella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	0.55 %
Mycobacterium pseudokansasii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium pseudokansasii	0.55 %
Rhizobium tibeticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium tibeticum	0.55 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.55 %
Bradyrhizobium icense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	0.55 %
Bradyrhizobium ivorense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium ivorense	0.55 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.55 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.55 %
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	0.55 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.55 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.55 %
Maricaulis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis	0.55 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.55 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.55 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.55 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000670\|JGI12454J11922_100101	All Organisms → cellular organisms → Bacteria	1433	Open in IMG/M
3300000670\|JGI12454J11922_100655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	693	Open in IMG/M
3300000678\|JGI12377J11919_100102	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300000680\|JGI12452J11691_100062	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300000682\|JGI12334J11920_100171	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300000695\|JGI12539J11930_100397	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300000717\|JGI12543J11896_100743	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300000856\|JGI12376J12823_100083	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300000898\|JGI12368J12877_100237	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300000909\|JGI12488J12863_102846	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300000935\|JGI12407J12866_102603	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300001867\|JGI12627J18819_10061065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1570	Open in IMG/M
3300003992\|Ga0055470_10016347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1311	Open in IMG/M
3300004006\|Ga0055453_10140371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	736	Open in IMG/M
3300004633\|Ga0066395_10024516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2441	Open in IMG/M
3300005332\|Ga0066388_100064369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	3921	Open in IMG/M
3300005332\|Ga0066388_101450543	All Organisms → cellular organisms → Bacteria	1196	Open in IMG/M
3300005332\|Ga0066388_102737125	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300005332\|Ga0066388_104060041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	746	Open in IMG/M
3300005332\|Ga0066388_104828028	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300005332\|Ga0066388_107679616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	540	Open in IMG/M
3300005334\|Ga0068869_101021852	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300005439\|Ga0070711_100369059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1158	Open in IMG/M
3300005441\|Ga0070700_100311740	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300005526\|Ga0073909_10056839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium tibeticum	1438	Open in IMG/M
3300005537\|Ga0070730_10128546	All Organisms → cellular organisms → Bacteria → Proteobacteria	1733	Open in IMG/M
3300005543\|Ga0070672_101395243	Not Available	626	Open in IMG/M
3300005548\|Ga0070665_100234657	All Organisms → cellular organisms → Bacteria	1835	Open in IMG/M
3300005556\|Ga0066707_10792122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	587	Open in IMG/M
3300005591\|Ga0070761_10070409	All Organisms → cellular organisms → Bacteria	1984	Open in IMG/M
3300005610\|Ga0070763_10039926	All Organisms → cellular organisms → Bacteria → Proteobacteria	2190	Open in IMG/M
3300005610\|Ga0070763_10115345	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300005617\|Ga0068859_102007821	Not Available	639	Open in IMG/M
3300005713\|Ga0066905_101222570	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300005713\|Ga0066905_102273924	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300005713\|Ga0066905_102295074	Not Available	504	Open in IMG/M
3300005764\|Ga0066903_100474367	All Organisms → cellular organisms → Bacteria → Proteobacteria	2105	Open in IMG/M
3300005764\|Ga0066903_100560365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1963	Open in IMG/M
3300005764\|Ga0066903_100641931	All Organisms → cellular organisms → Bacteria → Proteobacteria	1853	Open in IMG/M
3300005764\|Ga0066903_100733285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1750	Open in IMG/M
3300005764\|Ga0066903_100898428	All Organisms → cellular organisms → Bacteria	1602	Open in IMG/M
3300005764\|Ga0066903_102529245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	994	Open in IMG/M
3300005764\|Ga0066903_102767077	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300005764\|Ga0066903_103194326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	886	Open in IMG/M
3300005764\|Ga0066903_103763346	Not Available	815	Open in IMG/M
3300005764\|Ga0066903_103941041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	796	Open in IMG/M
3300005764\|Ga0066903_104973334	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300005764\|Ga0066903_105288163	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300005764\|Ga0066903_105521656	Not Available	666	Open in IMG/M
3300005764\|Ga0066903_107849681	Not Available	548	Open in IMG/M
3300005841\|Ga0068863_101658585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	649	Open in IMG/M
3300005921\|Ga0070766_10042450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2526	Open in IMG/M
3300005921\|Ga0070766_10916501	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300005937\|Ga0081455_10080004	All Organisms → cellular organisms → Bacteria	2681	Open in IMG/M
3300005937\|Ga0081455_10116997	All Organisms → cellular organisms → Bacteria → Proteobacteria	2107	Open in IMG/M
3300005937\|Ga0081455_10125684	Not Available	2013	Open in IMG/M
3300006028\|Ga0070717_11366535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	643	Open in IMG/M
3300006046\|Ga0066652_101208859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	715	Open in IMG/M
3300006046\|Ga0066652_101672398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	581	Open in IMG/M
3300006057\|Ga0075026_100118700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1330	Open in IMG/M
3300006057\|Ga0075026_100997423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	520	Open in IMG/M
3300006102\|Ga0075015_100495933	Not Available	703	Open in IMG/M
3300006175\|Ga0070712_101025986	All Organisms → cellular organisms → Bacteria → Proteobacteria	714	Open in IMG/M
3300006176\|Ga0070765_100064623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	3044	Open in IMG/M
3300006176\|Ga0070765_100455290	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300006176\|Ga0070765_101466176	Not Available	642	Open in IMG/M
3300006195\|Ga0075366_10653105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis	653	Open in IMG/M
3300006354\|Ga0075021_10383746	All Organisms → cellular organisms → Bacteria → Proteobacteria	879	Open in IMG/M
3300006354\|Ga0075021_10609048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300006893\|Ga0073928_10064340	All Organisms → cellular organisms → Bacteria	3219	Open in IMG/M
3300006914\|Ga0075436_100966175	Not Available	639	Open in IMG/M
3300009094\|Ga0111539_12653738	Not Available	581	Open in IMG/M
3300009147\|Ga0114129_10609840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium ivorense	1413	Open in IMG/M
3300009521\|Ga0116222_1028056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2506	Open in IMG/M
3300009683\|Ga0116224_10162427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1074	Open in IMG/M
3300009801\|Ga0105056_1012920	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300010047\|Ga0126382_11903056	Not Available	563	Open in IMG/M
3300010048\|Ga0126373_10131980	All Organisms → cellular organisms → Bacteria	2352	Open in IMG/M
3300010358\|Ga0126370_10113252	All Organisms → cellular organisms → Bacteria	1906	Open in IMG/M
3300010359\|Ga0126376_10700713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	974	Open in IMG/M
3300010361\|Ga0126378_10482430	All Organisms → cellular organisms → Bacteria	1355	Open in IMG/M
3300010366\|Ga0126379_10462624	All Organisms → cellular organisms → Bacteria	1332	Open in IMG/M
3300010375\|Ga0105239_10709508	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300010375\|Ga0105239_12479762	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	604	Open in IMG/M
3300010376\|Ga0126381_101482915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	980	Open in IMG/M
3300010379\|Ga0136449_100189634	All Organisms → cellular organisms → Bacteria → Proteobacteria	3935	Open in IMG/M
3300010379\|Ga0136449_100663719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1759	Open in IMG/M
3300010379\|Ga0136449_101673912	Not Available	961	Open in IMG/M
3300010379\|Ga0136449_103076949	Not Available	648	Open in IMG/M
3300010379\|Ga0136449_103775504	Not Available	570	Open in IMG/M
3300010379\|Ga0136449_104445653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	516	Open in IMG/M
3300010397\|Ga0134124_12302266	Not Available	579	Open in IMG/M
3300010398\|Ga0126383_10178871	Not Available	2013	Open in IMG/M
3300012918\|Ga0137396_11266338	Not Available	515	Open in IMG/M
3300012948\|Ga0126375_11711623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300012955\|Ga0164298_11559895	Not Available	518	Open in IMG/M
3300012957\|Ga0164303_10671413	Not Available	694	Open in IMG/M
3300012971\|Ga0126369_10013922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6283	Open in IMG/M
3300012971\|Ga0126369_10027541	All Organisms → cellular organisms → Bacteria	4638	Open in IMG/M
3300012988\|Ga0164306_11837197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	527	Open in IMG/M
3300013297\|Ga0157378_11965769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	634	Open in IMG/M
3300013308\|Ga0157375_13806278	Not Available	501	Open in IMG/M
3300014495\|Ga0182015_10119900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1808	Open in IMG/M
3300014495\|Ga0182015_10219875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1263	Open in IMG/M
3300015371\|Ga0132258_10945887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2176	Open in IMG/M
3300015372\|Ga0132256_102887052	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300015373\|Ga0132257_102823906	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300016294\|Ga0182041_10229955	Not Available	1497	Open in IMG/M
3300016319\|Ga0182033_10388441	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300016319\|Ga0182033_12049302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium pseudokansasii	521	Open in IMG/M
3300016357\|Ga0182032_10156806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1691	Open in IMG/M
3300016371\|Ga0182034_10356762	Not Available	1188	Open in IMG/M
3300016371\|Ga0182034_10910948	Not Available	756	Open in IMG/M
3300016404\|Ga0182037_11453472	Not Available	607	Open in IMG/M
3300016445\|Ga0182038_11182561	Not Available	681	Open in IMG/M
3300017924\|Ga0187820_1057765	Not Available	1059	Open in IMG/M
3300017943\|Ga0187819_10260130	Not Available	1014	Open in IMG/M
3300017946\|Ga0187879_10179809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1189	Open in IMG/M
3300017959\|Ga0187779_10096975	Not Available	1773	Open in IMG/M
3300017959\|Ga0187779_10521283	Not Available	788	Open in IMG/M
3300017959\|Ga0187779_10775753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	653	Open in IMG/M
3300017974\|Ga0187777_11184043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	558	Open in IMG/M
3300018040\|Ga0187862_10337966	Not Available	939	Open in IMG/M
3300018044\|Ga0187890_10031338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	3230	Open in IMG/M
3300018057\|Ga0187858_10326236	Not Available	967	Open in IMG/M
3300018090\|Ga0187770_10691728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	813	Open in IMG/M
3300021088\|Ga0210404_10438947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	733	Open in IMG/M
3300021178\|Ga0210408_11237800	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300021403\|Ga0210397_10402570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1023	Open in IMG/M
3300021403\|Ga0210397_10498072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	922	Open in IMG/M
3300021405\|Ga0210387_10028993	All Organisms → cellular organisms → Bacteria → Proteobacteria	4352	Open in IMG/M
3300021432\|Ga0210384_10127171	All Organisms → cellular organisms → Bacteria → Proteobacteria	2286	Open in IMG/M
3300025915\|Ga0207693_10400930	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300025930\|Ga0207701_10108118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2489	Open in IMG/M
3300026552\|Ga0209577_10185133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1611	Open in IMG/M
3300026945\|Ga0207743_1001229	Not Available	3492	Open in IMG/M
3300026981\|Ga0207822_1018169	Not Available	770	Open in IMG/M
3300027330\|Ga0207777_1040061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	844	Open in IMG/M
3300027497\|Ga0208199_1073505	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300027635\|Ga0209625_1029917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1213	Open in IMG/M
3300027783\|Ga0209448_10200237	Not Available	662	Open in IMG/M
3300027854\|Ga0209517_10366397	Not Available	820	Open in IMG/M
3300027855\|Ga0209693_10001943	All Organisms → cellular organisms → Bacteria → Proteobacteria	9072	Open in IMG/M
3300027894\|Ga0209068_10532343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	680	Open in IMG/M
3300028047\|Ga0209526_10323736	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300030986\|Ga0308154_109859	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	617	Open in IMG/M
3300031368\|Ga0307429_1087782	Not Available	894	Open in IMG/M
3300031538\|Ga0310888_10108005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1426	Open in IMG/M
3300031543\|Ga0318516_10278380	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300031546\|Ga0318538_10121817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1362	Open in IMG/M
3300031562\|Ga0310886_10000397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11463	Open in IMG/M
3300031563\|Ga0307436_1065907	All Organisms → cellular organisms → Bacteria → Proteobacteria	1048	Open in IMG/M
3300031564\|Ga0318573_10167968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1155	Open in IMG/M
3300031573\|Ga0310915_10003797	All Organisms → cellular organisms → Bacteria	8212	Open in IMG/M
3300031640\|Ga0318555_10495403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	662	Open in IMG/M
3300031736\|Ga0318501_10323420	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300031744\|Ga0306918_10665038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	815	Open in IMG/M
3300031777\|Ga0318543_10325888	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300031779\|Ga0318566_10368711	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300031819\|Ga0318568_10057784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2254	Open in IMG/M
3300031833\|Ga0310917_10883474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300031846\|Ga0318512_10685299	Not Available	525	Open in IMG/M
3300031854\|Ga0310904_10132980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1421	Open in IMG/M
3300031879\|Ga0306919_10226410	All Organisms → cellular organisms → Bacteria	1399	Open in IMG/M
3300031897\|Ga0318520_10092215	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300031942\|Ga0310916_10473103	Not Available	1067	Open in IMG/M
3300031943\|Ga0310885_10395939	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	735	Open in IMG/M
3300031945\|Ga0310913_10175825	All Organisms → cellular organisms → Bacteria → Proteobacteria	1489	Open in IMG/M
3300031947\|Ga0310909_10988212	All Organisms → cellular organisms → Bacteria → Proteobacteria	688	Open in IMG/M
3300032003\|Ga0310897_10222901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	832	Open in IMG/M
3300032009\|Ga0318563_10700522	Not Available	544	Open in IMG/M
3300032017\|Ga0310899_10514605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	589	Open in IMG/M
3300032035\|Ga0310911_10367451	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300032059\|Ga0318533_10279549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1208	Open in IMG/M
3300032066\|Ga0318514_10143836	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300032091\|Ga0318577_10166924	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300032160\|Ga0311301_10164734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3943	Open in IMG/M
3300032160\|Ga0311301_10213056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	3278	Open in IMG/M
3300032892\|Ga0335081_10114069	All Organisms → cellular organisms → Bacteria → Proteobacteria	3973	Open in IMG/M
3300033289\|Ga0310914_10409732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1227	Open in IMG/M
3300033289\|Ga0310914_11366359	Not Available	611	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.56%
Host-Associated	Host-Associated	10.44%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.67%
Plants	Host-Associated → Plants	10.44%
Aquatic	Environmental → Aquatic	9.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.49%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.40%
Freshwater	Environmental → Aquatic → Freshwater	3.85%
Sediment	Environmental → Aquatic → Sediment	3.30%
Marine	Environmental → Aquatic → Marine	2.20%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.55%
Roots	Host-Associated → Plants → Roots	0.55%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.96%
Loam	Environmental → Terrestrial → Soil → Loam	30.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.40%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.30%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.30%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.65%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.10%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.10%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.55%
Sand	Environmental → Terrestrial → Soil → Sand	0.55%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.55%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	28.02%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.30%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.30%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.30%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.30%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.65%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.10%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.10%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.10%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.10%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.55%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.55%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.55%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	20.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.38%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.49%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.95%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.30%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.20%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.10%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.10%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.10%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.10%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.10%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.10%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.10%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.10%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.55%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.55%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.55%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.55%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.55%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.55%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.55%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000670	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 78	Environmental	Open in IMG/M
3300000678	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46	Environmental	Open in IMG/M
3300000680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 32	Environmental	Open in IMG/M
3300000682	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 59	Environmental	Open in IMG/M
3300000695	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74	Environmental	Open in IMG/M
3300000717	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68	Environmental	Open in IMG/M
3300000856	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 47	Environmental	Open in IMG/M
3300000898	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 58	Environmental	Open in IMG/M
3300000909	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37	Environmental	Open in IMG/M
3300000935	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300003992	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1	Environmental	Open in IMG/M
3300004006	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026945	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 55 (SPAdes)	Environmental	Open in IMG/M
3300026981	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 67 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030986	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_143 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031368	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-230	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031563	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F031584

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12454J11922_1001011	3300000670	Tropical Forest Soil	QRDCNSSTALEFGPLMSALGHVWTAPWQELSDASAALVGCGHVSGLLMRPM*
JGI12454J11922_1006552	3300000670	Tropical Forest Soil	MSALGHVWTAPWQELSDVAAALVGCGHVSGLLMRRMCRWP*
JGI12377J11919_1001021	3300000678	Tropical Forest Soil	ALGHVWTAPWQELSDASAALVGCGHVSGLLMRPM*
JGI12452J11691_1000623	3300000680	Tropical Forest Soil	HPTGGMSTKGHVWTAPWQELSDASAALVGCGHVSGLLMRPM*
JGI12334J11920_1001712	3300000682	Tropical Forest Soil	LMSALGHVWTAPWQELSDASAALVGCGHVSGLLMRPM*
JGI12539J11930_1003972	3300000695	Tropical Forest Soil	ALEFGPLMSALGHVWTAPWQELSDASAALVGCGHVSGLLMRPM*
JGI12543J11896_1007432	3300000717	Tropical Forest Soil	MEIAMSALGHVWTAPWQELSDASAALVGCGHVSGLLMRPM*
JGI12376J12823_1000831	3300000856	Tropical Forest Soil	KTSSRNVALGHVWTAPWQELSDASAALVGCGHVSGLLMRPM*
JGI12368J12877_1002372	3300000898	Tropical Forest Soil	SALGHVWTAPWQELSDASAALVGCGHVSGLLMRPM*
JGI12488J12863_1028461	3300000909	Tropical Forest Soil	YALGHVWTAPWQELSDVAAALVGCGHVSGLLMRRMCRWP*
JGI12407J12866_1026032	3300000935	Tropical Forest Soil	GHVWTAPWQELSDASAALVGCGHVSGLFVRHNGRWP*
JGI12627J18819_100610653	3300001867	Forest Soil	LGHVWTAPWQELSDVLQQVGCGHVSGLLMRQVGRWP*
JGIcombinedJ51221_100293803	3300003505	Forest Soil	EVIAWPMPALGHVWTAPDWQELLDVDAALVGCGHVSGLT*
Ga0055470_100163472	3300003992	Natural And Restored Wetlands	MSALGHVWTAPWQELSDMSAALVGCGHVSGLLMRRCGRWP*
Ga0055453_101403711	3300004006	Natural And Restored Wetlands	LGHVWTAPFWQGVFWVQLVECCHVSGLLMRRVVPLALMRSAWA
Ga0066395_100245161	3300004633	Tropical Forest Soil	MGNATVHRQMSAKGHVWTAPWQEPSDVIAALVGCGHVSGLLMRQERPLALML
Ga0066388_10006436910	3300005332	Tropical Forest Soil	MSPLGHVWTAPWQEPSDVVAALVGCGHVSGLLMRQERPLALM
Ga0066388_1014505433	3300005332	Tropical Forest Soil	MRSRSSTKGAALGHVWTAPWQEPSDVVAALVGCGHVSGLLMRQERPLALM
Ga0066388_1027371251	3300005332	Tropical Forest Soil	MGLAKSALGHVWTAPWQELSDIPAALVGCGHVSGLFVRQLKPLA
Ga0066388_1040600413	3300005332	Tropical Forest Soil	MSPLGHVWTAPWQVLSDASAALVGCGHVSGLFVRPMWPLAIML
Ga0066388_1048280281	3300005332	Tropical Forest Soil	MLTASLPMSAPGHVWTAPWQELSDVAAALVGCGHVSGLLMRRGWPLALMLCAD
Ga0066388_1076796162	3300005332	Tropical Forest Soil	MPDLGHVWTAPWQEPSDVIAALVGCGHVSGLLMRQERPLALM
Ga0068869_1010218521	3300005334	Miscanthus Rhizosphere	ALGHVWTAPWQELSDASAALVGCGHVSGLLMRRGYGRWP*
Ga0070711_1003690592	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MGHVWTAPWQELSDVSAALVECGHVSGLLMRQVWPLALMLCAD
Ga0070700_1003117401	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	GHVWTAPWQELSDGLQQVGCGHVSGLLMRQVWPLALALRGSGPNR*
Ga0073909_100568391	3300005526	Surface Soil	MSALGHVWTAPWQVLSDGSAALVGCGHVSGLLMRRCGRWP*
Ga0070730_101285462	3300005537	Surface Soil	MSASGHVWTAPWQELSDVSAALVGCGHVSGLLVRHL*
Ga0070672_1013952432	3300005543	Miscanthus Rhizosphere	MSAMGHVWTAPWQELSDVSAALVGCGHVSGLLMRQVWPLALMLCAD
Ga0070665_1002346572	3300005548	Switchgrass Rhizosphere	MPALGHVWTAPWQELCDVDAGLGGCGHVSGLLVRR*
Ga0066707_107921222	3300005556	Soil	MGHVWTAPWQELSDVAAALVGCGHVSGLLMRQVWPLALMLCAD
Ga0070761_100704092	3300005591	Soil	MGHVWTAPWQELSDVSAALVGCGHVSGLLMRQCGRWP*
Ga0070763_100399264	3300005610	Soil	MGHVWTAPWQGHSDVRAALVGCGHVSGLLMRQVWPL
Ga0070763_101153452	3300005610	Soil	FLHSQGHVWTAPWQELSDGLQQVGCGHVSGLLVRQGGRWP*
Ga0068859_1020078212	3300005617	Switchgrass Rhizosphere	MSALGHVWTAPWQGLSDVSAALVGCGHVSGLLMRQVWPLAL
Ga0066905_1012225701	3300005713	Tropical Forest Soil	MSALGHVWTAPWQELSDAAAALVGCGHVSGLFVRRSSR
Ga0066905_1022739242	3300005713	Tropical Forest Soil	MSVSGHVWTALDWQELSYVGAALVGCGHVSGLLMRHGWPLALM
Ga0066905_1022950741	3300005713	Tropical Forest Soil	VWTALDWQELSYVGAALVGCGHVSGLLMRHGWPLALM
Ga0066903_1004743673	3300005764	Tropical Forest Soil	MSALGHVWTAPPWQELSDVGAALVGCGHVSGLFVRRLKP
Ga0066903_1005603651	3300005764	Tropical Forest Soil	MSAMGHVWTAPWQEDFDVVQQVGCGHVSGLLVRQVWPLALML
Ga0066903_1006419311	3300005764	Tropical Forest Soil	MTRTSRMSALGHVWTAPWQELSDIPAALVGCGHVSGLFVRQLKPLA
Ga0066903_1007332851	3300005764	Tropical Forest Soil	MSALGHVWTAPWQEDFDVVQQVGCGHVSGLLVRQVWPLALML
Ga0066903_1008984283	3300005764	Tropical Forest Soil	ALGHVWTAPWQELSDVAAALVGCGHVSGLLMRRMCRWP*
Ga0066903_1025292452	3300005764	Tropical Forest Soil	MTSALGHVWTAPWQEPSDVIATLVGCGHVSGLLMRQERPLALM
Ga0066903_1027670771	3300005764	Tropical Forest Soil	MSGLGHVWTAPWQEHSEGSAGLVGCGHVSGLLMRHHGPLALMLCA
Ga0066903_1031943261	3300005764	Tropical Forest Soil	MASLMSALGHVWTAPWQELSDVAAALVGCGHVSGLLMRRMCRW
Ga0066903_1037633461	3300005764	Tropical Forest Soil	MSALGHVWTAPPWQELSDAAAALVGCGHVCGLFVRPVWPL
Ga0066903_1039410412	3300005764	Tropical Forest Soil	MGHVWTAPWQEPSDVIATLVGCGHVSGLLMRQERPLALM
Ga0066903_1049733341	3300005764	Tropical Forest Soil	MSALGHVWTAPWQGHCEIGAGLVGCGHVSGLLMRHDGPLAL
Ga0066903_1052881632	3300005764	Tropical Forest Soil	MGHVWTAPWQEPSDVIATLVGCGHVSGLLMRQERPLAL
Ga0066903_1055216561	3300005764	Tropical Forest Soil	MSELGHVWTAPWQEPSDVIAALVGCGHVSGLLMRQERPLA
Ga0066903_1078496811	3300005764	Tropical Forest Soil	MRSAVAMSALGHVWTAPWQELSDIPAALVGCGHVSGLFVRQLKPL
Ga0068863_1016585852	3300005841	Switchgrass Rhizosphere	MGHVWTAPWQGLSDVSAALVGCGHVSGLLMRQVWP
Ga0070766_100424501	3300005921	Soil	MSGSAMSAMGHVWTAPWQGHSDVRAALVGCGHVSGLLMRQVWPLALML
Ga0070766_109165012	3300005921	Soil	MTALGHVWTAPWQGHSDVRAALVGCGHVSGLLMRQV
Ga0081455_100800041	3300005937	Tabebuia Heterophylla Rhizosphere	MSNCPMSALGHVWTAPWQELSDAAAALVGCGHVSGLLMRRIRPLALMLC
Ga0081455_101169971	3300005937	Tabebuia Heterophylla Rhizosphere	MSALGHVWTAPWQELSDAAALVGCGHVSGLLMRRICR
Ga0081455_101256841	3300005937	Tabebuia Heterophylla Rhizosphere	MSALGHVWTAPWHVWTAPWQELSDAAAALFGCGHVSGLF
Ga0070717_113665353	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSLLGHVWTAPWQELSDVFAVLVGCGHVSGLLMRQVWPLALM
Ga0066652_1012088591	3300006046	Soil	MPVMSLLGHVWTAPWQELSDGLQQVGCGHVSGLLMRQVWPLALML
Ga0066652_1016723982	3300006046	Soil	MTGLGHVWTAPWQELSDGLQQVGCGHVSGLLMRQVWPLALML
Ga0075026_1001187001	3300006057	Watersheds	MSVVGHVWTAPWQELSDVSAALVGCGHVSGLLMRQV
Ga0075026_1009974231	3300006057	Watersheds	MSHLGHVWTAPWQELSDVSAALVGCGHVSGLLMRQV
Ga0075015_1004959331	3300006102	Watersheds	VQRTVNKASMSEVGHVWTAPWQELFDVSAALVGCGHVSGLLMRRGWPLALMLC
Ga0070712_1010259862	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSALGHVWTAPWQELSDVFAVLVGCGHVSGLLMRQVWPL
Ga0070765_1000646234	3300006176	Soil	MSASGHVWTAPWQGHSDVRAALVGCGHVSGLLMRQVWPL
Ga0070765_1004552901	3300006176	Soil	SALGHVWTAPWQELSDVSAALVGCGHVSGLLMRQCGRWP*
Ga0070765_1014661761	3300006176	Soil	MSALGHVWTAPWQGHSDVRAALVGCGHVSGLLMRQVWPLA
Ga0075366_106531052	3300006195	Populus Endosphere	VQANAKGHVWTAPWQEPSDVIAALVGCGHVSGLLMRQ
Ga0075021_103837462	3300006354	Watersheds	MTGLGHVWTAPWQELSDVSAALVGCGHVSGLLMRQVWPLA
Ga0075021_106090481	3300006354	Watersheds	MGHVWTAPWQELSNVSAALVGCGHVSGLLMRQVWPLALML
Ga0073928_100643404	3300006893	Iron-Sulfur Acid Spring	MSQLGHVWTAPWQELSDVCAALVGCGHVSGLLMRRGWPLALMLC
Ga0075436_1009661751	3300006914	Populus Rhizosphere	MFKASSAMSAPGHVWTAPPWQELSDVCAALVGCGHVSGL
Ga0111539_126537382	3300009094	Populus Rhizosphere	VWTAPWQELSDVAAALVGCGHVSGLLMRQVWPLALMLC
Ga0114129_106098401	3300009147	Populus Rhizosphere	ENVGMQPCISALGHVWTAPWQELSDVAAALVGCGHVSGLLMRQV*
Ga0116222_10280561	3300009521	Peatlands Soil	MSAPGHVWTAPWQELSDVAAALVGCGHVSGLFVRPVWPLAIMLC
Ga0116224_101624272	3300009683	Peatlands Soil	MLSLMMSAVGHVWTAPWQELSDVAAALVGCGHVSGLFVRPVW
Ga0105056_10129202	3300009801	Groundwater Sand	HVWTALNWQEFFLTLVQLVGCGHVSGLFMRHGWPLALMLSAN*
Ga0126382_119030561	3300010047	Tropical Forest Soil	MSALGHVWTAPWQELSNVAAALVGCGHVSDLFVRRLSR
Ga0126373_101319801	3300010048	Tropical Forest Soil	MSALGHVWTAPPWQELSELLAALVGCGHVSGLLMRPDVPL
Ga0126370_101132523	3300010358	Tropical Forest Soil	MSALGHVWTAPWQELSDIPAALVGCGHVSGLFVRQLKP
Ga0126376_107007131	3300010359	Tropical Forest Soil	MSALGHVWTAPWQELSDVAAALVGCGHVSGLFVRR
Ga0126378_104824304	3300010361	Tropical Forest Soil	VHHSTSWSLMSALGHVWTAPWQELSDIPAALVGCGHVSGLFVRQLKPLAI
Ga0126379_104626244	3300010366	Tropical Forest Soil	MRSRSSTKGAALGHVWTAPWQEPSDVIAALVGCGHVSGLLMRLERPLALMLC
Ga0105239_107095081	3300010375	Corn Rhizosphere	MSALGHVWTAPWQELSDVFAALVGCGHVSGLLMRLVWPLALMLC
Ga0105239_124797621	3300010375	Corn Rhizosphere	MKSCMSGMGHVWTAPWQELSDVFAALVGCGHVSGLLMRLVWPLALMLC
Ga0126381_1014829152	3300010376	Tropical Forest Soil	MRHSKNGGRMSATGHVWTAPWQEASDVIAALVGCGHVSGLLMRLERPLALML
Ga0136449_1001896341	3300010379	Peatlands Soil	MMSAVGHVWTAPWQELSDVAAALVGCGHVSGLFVRPVWPLAIML
Ga0136449_1006637191	3300010379	Peatlands Soil	MPALGHVWTAPWQELSDVSAALVGCGHVSGLLMRRVWPLALM
Ga0136449_1016739121	3300010379	Peatlands Soil	MGHVWTAPWQELSDAAAALVGCGHVSGLLMRRGWPLALML
Ga0136449_1030769491	3300010379	Peatlands Soil	MGHVWTAPWQELSDVGAALVGCGHVYGLFVRLGWPLA
Ga0136449_1037755041	3300010379	Peatlands Soil	VWTAPWQELFDVSAALVGCGHVSGLLMRRGWPLALMLC
Ga0136449_1044456532	3300010379	Peatlands Soil	MSGWPMSVLGHVWTAPWQELSDVAAALVGCGHVSGLFVRPVWPLA
Ga0134124_123022661	3300010397	Terrestrial Soil	VWTAPWQELSDVAAALVGCGHVSGLLMRQVWPLALMLCAD
Ga0126383_101788712	3300010398	Tropical Forest Soil	MPDLGHVWTAPWQEPSDVIAALVGCGHVSGLLMRQERPLALMLC
Ga0137396_112663381	3300012918	Vadose Zone Soil	MDGANGWLMSELGHVWTAPWQELSDISAALVGCGHVSGLLMRQVWPLAL
Ga0126375_117116231	3300012948	Tropical Forest Soil	MSALGHVWTAPWQELSDVAAALVGRGHVSGLFVRRIWPLALMLCADRV
Ga0164298_115598952	3300012955	Soil	MGHVWTAPDWQELLDVDAALVGCGHVSVLFVRHGWPLA
Ga0164303_106714131	3300012957	Soil	VAAGCPFCPHVWTAPWQELSDVFAALVGCGHVSGLLVRQVWPLAL
Ga0126369_100139221	3300012971	Tropical Forest Soil	MRHSKNGGRMSAKGHVWTAPWQEPSDVIAALVGCGHVSGLLMRLERPLA
Ga0126369_100275416	3300012971	Tropical Forest Soil	MPALGHVWTAPWQEPSDVIAALVGCGHVSGLLMRLERPLALMLC
Ga0164306_118371971	3300012988	Soil	MAALGHVWTAPWQELSDVFAGLVGCGHVSGLLVRQVWPLALMLCA
Ga0157378_119657691	3300013297	Miscanthus Rhizosphere	MGHVWTAPWQGLSDVSAALVGCGHVSGLLMRQVWPL
Ga0157375_138062781	3300013308	Miscanthus Rhizosphere	RAKSALGHVGTAPWQGFLDVSAALVGCGHVSGLLIRQVWPLALVRNSAPS*
Ga0182015_101199001	3300014495	Palsa	MSELGHVWTAPWQELSDVAAALVGCGHVSGLFVRPVWPLAIMLC
Ga0182015_102198751	3300014495	Palsa	MFASGHVWTAPWQELSDVAAALVGCGHVSGLFVRPVWPLAIML
Ga0132258_109458871	3300015371	Arabidopsis Rhizosphere	MSASGHVWTAPWQELSDVAAALVGCGHVSGLLMRQVWPL
Ga0132256_1028870521	3300015372	Arabidopsis Rhizosphere	MSAQGHVWTAPWQELSDVAAALVGCSHVSGLLMRRGWP
Ga0132257_1028239061	3300015373	Arabidopsis Rhizosphere	MGHVWTAPWQEPSDVAATLVGCGHVSGLLMRQVWPLAL
Ga0182041_102299551	3300016294	Soil	MLRLGHVWTAPWQELSDVSAALVGCGHVSGLLMRQVWLLALM
Ga0182033_103884411	3300016319	Soil	VTSALGHVWTAPWQELSDGSAALVGGGHVSGMFLRPLWQLAITVCA
Ga0182033_120493022	3300016319	Soil	MSALGHVWTAPWQELSDIPAALVGCGHVSGLFVRQLKPLAI
Ga0182032_101568061	3300016357	Soil	YVAKAAMSALGHVWTAPWQELSDVSAALVGCGHVSGLLVRRMCRWP
Ga0182034_103567621	3300016371	Soil	MLRLGHVWTAPWQELSDVSAALVGCGHVSGLLMRQVRPL
Ga0182034_109109482	3300016371	Soil	MSALGHVWTAPWQELSDIPAALVGCGHVSGLLMRHGWPL
Ga0182037_114534721	3300016404	Soil	MSALGHVWTAPWQELSDVAAALVGCGHVSGLLMRRM
Ga0182038_111825612	3300016445	Soil	MLRLGHVWTAPWQELSDVSAALVGCGHVSGLLMRQVW
Ga0187820_10577651	3300017924	Freshwater Sediment	MQRLRTALGHVWTAPWQELSDVAAALVGCGHVSGLF
Ga0187819_102601301	3300017943	Freshwater Sediment	MQRLRTALGHVWTAPWQELSDVAAALVGCGHVSGLFVRR
Ga0187879_101798091	3300017946	Peatland	MSALGHVWTAPWQELSDAAAALVGCGHVSGLLMRRGWPLALMLF
Ga0187779_100969752	3300017959	Tropical Peatland	MSALGHVWTAPWQELSDVFAALVGCGHVSGLLVRQVWPLALMLC
Ga0187779_105212831	3300017959	Tropical Peatland	MSALGHVWTAPWQELSDVSAALVGCGHVSGLLMRPVRPLALMLC
Ga0187779_107757531	3300017959	Tropical Peatland	MTALGHVWTALWQELSDVSAALVGCGHVSGLFVRPMWPLALMLCAD
Ga0187777_111840432	3300017974	Tropical Peatland	MYPSTSALGHVWTAPWQELSDVFAALVGCGHVSGLLVRQVWPLALMLC
Ga0187862_103379661	3300018040	Peatland	MGHVWTAPWQELSDAAAALVGCGHVSGLLMRRGWPLA
Ga0187890_100313384	3300018044	Peatland	VRYGKFGGLMSALGHVWTAPWQELSDAAAALVGCGHVSGLLMRRGWPLALMLF
Ga0187858_103262362	3300018057	Peatland	MGHVWTAPWQELSDAAAALVGCGHVSGLLMRRGWPLALMLF
Ga0187770_106917281	3300018090	Tropical Peatland	MTALGHVWTAPWQGLFDAAAALVGCGHVSGLLMRRGW
Ga0210404_104389472	3300021088	Soil	MSASGHVWTAPWQGHSDVRAALVGCGHVSGLLMRQVWPLALML
Ga0210408_112378001	3300021178	Soil	MSELGHVWTAPWQELSDASAALVGCGHVSGLLRRRVWPLALMLC
Ga0210397_104025701	3300021403	Soil	MTASGHVWTAPWQGHSDVRAALVGCGHVSGLLMRQVWPLALMLCAD
Ga0210397_104980721	3300021403	Soil	MSALGHVWTAPWQGLSDVAAALVGCGHVSGLLMRRG
Ga0210387_100289936	3300021405	Soil	MGHVWTAPWQELSDVFAALVGCGHVSGLLVRQVWPLALMLCA
Ga0210384_101271711	3300021432	Soil	MGHVWTAPWQELSDVFAALVGCGHVSGLLVRQVWPLALMLCAD
Ga0207693_104009301	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LRAATGHVWTAPWEELSDVLQQLVGCGHVSGLLMRQVWP
Ga0207701_101081181	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKSCMSGMGHVWTAPWQELSDVFAALVGCGHVSGLLMRL
Ga0209577_101851331	3300026552	Soil	MSALGLLRTAPWQELSVVSAALVGCGHVSGLFVRPMWPLAL
Ga0207743_10012291	3300026945	Tropical Forest Soil	FSAIALGHVWTAPWQELFDVAAALVGCGHVSGLFVRHNGRWP
Ga0207822_10181692	3300026981	Tropical Forest Soil	VVSSAMGHVWTAPWQELSDVAAALVGCGHVSGLLM
Ga0207777_10400612	3300027330	Tropical Forest Soil	MSALGHVWTAPWQELSDVVAALVGCGHVSGLLMRRMWPLA
Ga0208199_10735052	3300027497	Peatlands Soil	MSAVGHVWTAPWQELSDVDAALVGCGHVSGLLMRRGWPLALMLCA
Ga0209625_10299172	3300027635	Forest Soil	MSEMGHVWTAPWQELSDVAAALVGCGHVSGLLMRRGWPLALMLC
Ga0209448_102002371	3300027783	Bog Forest Soil	MSGLGHVWTAPWQELSDVAAALVGCGHVSGLFVRP
Ga0209517_103663971	3300027854	Peatlands Soil	MGHVWTAPWQELSDAAAALVGCGHVSGLLMRRGWPLAL
Ga0209693_100019431	3300027855	Soil	MSASGHVWTAPWQGHSDVRAALVGCGHVSGLLMRQV
Ga0209068_105323431	3300027894	Watersheds	MGHVWTAPWQELSDVSAALVGCGHVSGLLMRQVWP
Ga0209526_103237361	3300028047	Forest Soil	NPAVAMTAMGHVWTAPWQELSDVSAALVGCGHVSGLLMRRG
Ga0308154_1098591	3300030986	Soil	MLLMGHVWTAPDWQELFDVDAALVGCRHVCGLFVRRAWPLALMLCADQ
Ga0307429_10877821	3300031368	Salt Marsh	MSALGHVWTAPWQELSDVAAALVGCGHVSGLFVRLVWPLA
Ga0310888_101080053	3300031538	Soil	MSALGHVWTAPWQELSDVFAALVGCGHVSGLLMRLVWPLAL
Ga0318516_102783801	3300031543	Soil	MSQLGHVWTAPWQELSDVSAALVGCGHVSGLLMRQVRPLAL
Ga0318538_101218173	3300031546	Soil	LLMGHVWTAPPWQELSDLAAALVGCGHVSGLFVRP
Ga0310886_100003971	3300031562	Soil	MSALGHVWTAPWQELSDVFAALVGCGHVSGLLMRLVWPLA
Ga0307436_10659071	3300031563	Salt Marsh	MGHVWTAPWQELSDVAAALVGCGHVSGLFVRLVWPLALMLCA
Ga0318573_101679682	3300031564	Soil	AYPVSALGHVWTAPPWQELSDLAAALVGCGHVSGLFVRP
Ga0310915_1000379713	3300031573	Soil	MSALGHVWTAPWQELSDAAAALVGCGHVSGLFVRRLS
Ga0318555_104954031	3300031640	Soil	MGHVWTAPWQEHCEVDAGLVGCGHVSGLLLRYDGPLALML
Ga0318501_103234202	3300031736	Soil	MSALGHVWTAPWQELSDIPAALVGCGHVSGLFVRQLKPLAIM
Ga0306918_106650381	3300031744	Soil	MSALGHVWTAPWQELSDIPAALVGCGHVSGLFVRQLKPLA
Ga0318543_103258881	3300031777	Soil	VLMSALGHVWTAPWQELSDVFAALVGCGHVSGLLMRRMCRWP
Ga0318566_103687112	3300031779	Soil	VHELSILSWGGGGARTASGHVWTAPWQELSDVSAALVGCGHVSGLLMRQVWPLALM
Ga0318568_100577845	3300031819	Soil	SALGHVWTAPPWQELSDLAAALVGCGHVSGLFVRP
Ga0310917_108834742	3300031833	Soil	MFALGRVWTAPWQELPDAAAALVGCGHVSGLFVLPMW
Ga0318512_106852991	3300031846	Soil	MSALGHVWTAPWQELSDIPAALVGCGHVSGLFVRQLKPLAIMHC
Ga0310904_101329802	3300031854	Soil	MSALGHVWTAPWQELSDVFAALVGCGHVSGLLMRLVWPLALMLCA
Ga0306919_102264101	3300031879	Soil	EQLGAMSALGHVWTAPWQELSDVFAALVGCGHVSGLLMRRMCRWP
Ga0318520_100922154	3300031897	Soil	PYHSARAVVHHSKFKWLMSALGHVWTAPWQELSDVSAALVGCGHVSGLFMRPM
Ga0310916_104731031	3300031942	Soil	MLRLGHVWTAPWQELSDVSAALVGCGHVSGLLMRQV
Ga0310885_103959391	3300031943	Soil	MKSCMSGMGHVWTAPWQELSDVFAALVGCGHVSGLLMRLVWPLAL
Ga0310913_101758252	3300031945	Soil	MSALGHVWTAPWQELSDASAALVGCGHVSGLFVRPMWPLAI
Ga0310909_109882121	3300031947	Soil	MSASGHVWTAPWQELSDVSAALVGCGHVSGLLMRQVRPLALM
Ga0310897_102229012	3300032003	Soil	MSALGHVWTAPWQELSDVFAALVGCGHVSGLLMRLVWPLALM
Ga0318563_107005221	3300032009	Soil	DDAMGHVWTAPWQELSDIAAALVGCGHVSGLFVRR
Ga0310899_105146051	3300032017	Soil	RLESGLGHVWTAPWQELSDVSAALVECGHVSGLLMRQVWPPALMPHRPG
Ga0310911_103674511	3300032035	Soil	MSALGHVWTAPWQELSDIPAALVGCGHVSGLFVRQ
Ga0318533_102795491	3300032059	Soil	KLAYPVSALGHVWTAPPWQELSDLAAALVGCGHVSGLFVRP
Ga0318514_101438362	3300032066	Soil	FALSHVWTAPPWQKLSDAAAALLGCGHVSGLFVRR
Ga0318577_101669242	3300032091	Soil	SYVAKAAMSALGHVWTAPWQELSDVSAALVGCGHVSGLLVRRMCRWP
Ga0311301_101647348	3300032160	Peatlands Soil	MLSLMMSAVGHVWTAPWQELSDVAAALVGCGHVSGLFVRPVWPLAIMLC
Ga0311301_102130561	3300032160	Peatlands Soil	VRYGKFGGLMSALGHVWTAPWQELSDAAAALVGCGHVSGLLMRRGWPLALMLFAD
Ga0335081_101140691	3300032892	Soil	MSHLGHVWTAPWQELFDVFAALVGCGHVSGLLMRLGWPLALMLCA
Ga0310914_104097322	3300033289	Soil	MSALGHVWTTPWQELSDASAALVGCGHVSGLFVRPMWPLAI
Ga0310914_113663592	3300033289	Soil	MIIHAMTAMSALGHVWTAPWQELSDASAALVGCGH

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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