3300000561: Amended soil microbial communities from Kansas Great Prairies, USA - acetate DNA F2.1B clc assemly

Overview

Basic Information

• IMG/M Taxon OID: 3300000561
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0051396 | Gp0054318 | Ga0011524
• Sample Name: Amended soil microbial communities from Kansas Great Prairies, USA - acetate DNA F2.1B clc assemly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 890834920
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	17
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Kansas Great Prairie, Usa, Amended With Brdu

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → prairie → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Kanza Prairie, Kansas, USA
• Coordinates
  • Lat. (^o): 39.100992
  • Long. (^o): -96.608258
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001729	Metagenome / Metatranscriptome	645	Y
F002007	Metagenome / Metatranscriptome	605	Y
F003164	Metagenome / Metatranscriptome	504	Y
F006539	Metagenome / Metatranscriptome	370	Y
F009941	Metagenome	310	N
F012504	Metagenome	280	Y
F016660	Metagenome	245	Y
F018073	Metagenome / Metatranscriptome	237	Y
F026924	Metagenome / Metatranscriptome	196	Y
F030992	Metagenome	183	Y
F032577	Metagenome / Metatranscriptome	179	N
F039673	Metagenome / Metatranscriptome	163	Y
F040189	Metagenome / Metatranscriptome	162	Y
F041725	Metagenome / Metatranscriptome	159	Y
F045926	Metagenome	152	Y
F056742	Metagenome / Metatranscriptome	137	Y
F057593	Metagenome	136	Y
F076067	Metagenome / Metatranscriptome	118	Y
F076261	Metagenome	118	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087925	Metagenome	110	Y
F093934	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
F21B_10198526	Not Available	2093
F21B_10266682	Not Available	712
F21B_10289962	Not Available	617
F21B_10550212	Not Available	520
F21B_10633699	Not Available	889
F21B_10687339	Not Available	1160
F21B_10687954	Not Available	1507
F21B_10694009	Not Available	563
F21B_10704478	Not Available	985
F21B_10829282	Not Available	524
F21B_10902141	Not Available	629
F21B_10906392	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	615
F21B_11408263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510
F21B_11477768	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	816
F21B_11924937	Not Available	629
F21B_11997819	Not Available	686
F21B_12015833	Not Available	647
F21B_12116132	Not Available	586
F21B_12284668	Not Available	588
F21B_12698338	Not Available	544
F21B_13081654	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Vulcanisaeta	579

Sequences

Scaffold ID	Protein ID	Family	Sequence
F21B_10198526	F21B_101985262	F040189	MAGPPLVYTPPNYTTQNVLYGVGILFTAIPGTTVPSDQNLGVASAWTGLGWAYVGATEAGLTVTFNPSTQDLNIEEQPTPVAVIVNTATLQVTCSLSEETLTNVNMAWGNGGSIAVTPAGAGQPGKSVLTLSTNFASMACAVIGRNQQGYARVLSIPQVMAAGQVQTAYRRAAQQRLYPLTLNATCPFNQISWTDLTAVATS*
F21B_10266682	F21B_102666821	F009941	NIEFVKPEWMLAHMKTESPKTQPIYPGSFLWPANSVYHVPESVKQGHSAASISRHMLKTIGQSQAARYQSLPSFRQIPLDGIFAAFTLKMNYVNQQSGEIEDIQILVEENQYKPKHSSTQVTRKTSIKFPASIFHRFTRFLEEFSEIPVQPRINDMTSETDCILTKTSRIATQTFTLSVRILRQAQESDRMIHIHVQGPPESHQPDSEIYFPWFQLYELVLASKDLYNELYENHYI*
F21B_10289962	F21B_102899621	F018073	MRRGGSLLITILLLLAAFWAGIQYERNNCRIDLPDTASQVDQSVKCRDYKGVDLPG*
F21B_10395330	F21B_103953302	F039673	PVAITSLNDYKELIRVGTSTVPDSRIPLLSYNCVNEFFENAQVGDLRVVRVGTPDQIVEVELFPSATKLNSTDLPSALQAGNVVYIQMTINGLKLVAGDGSTGYTSSGEWLGVPVTIPVTYVANDEVNNRKIADAMRLAVAEAIESNPAVNASVYVRESGLVNGRDPAANSENAFVTLAS
F21B_10550212	F21B_105502121	F045926	DNRWQFGVKEMSQFYAKAEDEERCLQSSIRQQPVMVQGLATEGKLRPFHGIVQAVEKGHTQYADYPLRITMK*
F21B_10633699	F21B_106336991	F009941	PSLQPPWTHLQSPQQQHQLPILGQVQPPFLTPANKFLQQEPQLMHLMAKPNVEFVKPEWMLAHIKTETPKTQPIYPGDFLWPANSMYHVPESVKQGHSAASISRHMLKTIGHSQADRYKSMPSFRQIPLDGIFAAFTLKMNFINKQSGEIEEIHIQVDENQWKPKHSSTQVTRKTLIKFPSSLFHRLTRFLEEFSEIPIQPRINDMNSETNSLLTKTQRIANFTFTLSIRIMRQAQESDRMIHIHVQQPPEANQPESEIYFPWFQLNELVLASKDLYNELYENHYI*
F21B_10687339	F21B_106873392	F056742	LKLADCRYKCKQTYFRRSLFVRMFTSEVEKVYQVKVKSCEEFCKFYVLFLSVAEMLYGKHYNYAIFKAISRGRPNLYMCLKCNSTLTAEESVTHTLQHMKQLGYKPLTYEENI*
F21B_10687954	F21B_106879545	F032577	MSAHMHIANNYNDVVDVITSLIAIYARTISVEPTLQQAIHKRQEHTQIASKLYHSLLPMLYGCNAIELSDLQAHYNDLTRTISRSFAVDLEHPRAHRAFDPNP*
F21B_10694009	F21B_106940091	F087925	RFHSPEGVGLMTATPKPTEHLTVDVEDPRTLTAPQLSKTIEEKWR*
F21B_10704478	F21B_107044782	F041725	MVDTVERYYQKYMEKPNEANARAYCLWRLRLHRRLKNDKDLLEAINDARNLGLHDEDPGKTYWDCDFG*
F21B_10829282	F21B_108292821	F001729	MKSNIVSHTGVMAARHTPWAPPLVEMATGMVGHLLAWERHERDGSWWAWVSWVQESGGRHHHKVVQVRADSLRPLEAPEAYKAVPRQLRRLDGQIRRIG*
F21B_10902141	F21B_109021412	F026924	MTVVKVCWRQHYKFEASKIVHLGRHGFHVPVIVYGHDPEKAQEDLCINMVGIYEPIGSFRENQLILPPKKGEKVGQEG*
F21B_10906392	F21B_109063921	F006539	MIETTAPWIVLYSVLSYFIAWGVYETIKDNAFQAGYWKGRKDGYDMHRRITDSKIDANNN
F21B_11408263	F21B_114082631	F002007	VRTSKPKRIYAPRIISDHIMVQEDFERLHKFLLETESLSEVSDDMRGLVEEEWPELAHKLPPKVP*
F21B_11477768	F21B_114777683	F016660	RSLDQLDTPEGFKAYQCMDCGCVGVKNIAEALHIPDSNIDRCAKCGGWQFLGTGCHTCALMGAK*
F21B_11924937	F21B_119249371	F003164	SSRLARRERRSSELATLDYPIKVATFWGRDAKAERQVYFDKFEEHKNWRNNIRFQLINWTTSGIGATLCLLGTILWLSEGSTPSWDRLWDLVGPFVIAVVGIYYVYQLMKRLDKAESEVRWLSLMLDQVKDYGQVNXXXXXXXXXXXXGRNGVRSSTQRLTQSTSVRAVAEPQ*
F21B_11997819	F21B_119978192	F081547	MPYLRGVFINFGEETYYLSCGIVNGGSLDTETYTVNQPSLMMVRLGRDLYIVTSELKLIIPVEPIKTLLSSETSKVYNEMLSQGNEVKPA*
F21B_12015833	F21B_120158331	F057593	MTTAKKYRAHAKKCFVRAQETDSEELRQASLEMASYWMDAAMRTECLGDSHVEPEQQAA*
F21B_12116132	F21B_121161322	F076067	VPTLVVSALSTFDNKGLKKAKKEVSAFDKQIKSFAKVFATA
F21B_12284668	F21B_122846681	F030992	MQRVLLDLSKTQLSKLRNGHNVRILPHMFGSGVDMIIDPMTFHNMAKKLEKGKGVVMGLSNEEIEANEMEGSGLMMGAGNKSGKISRIKKARKWREFSNSTLRDGIDTGKYGYEQFQ
F21B_12284668	F21B_122846682	F012504	YYVNCSRVPLEQQKAYRSLQIKGTNSSILPMDYLIFAVYEKNFKLDVISGNLERVD*
F21B_12698338	F21B_126983381	F093934	DGIPARVARIGYLRSPLNVPGCQVFRDWSAGPGGISHTLWLKIFYGPHTGQQSDYAFWVYRSAIPRGLGVLVDIYYDGTYGLYAVKASPQCTGT*
F21B_13081654	F21B_130816542	F076261	LAHMIGSVTFQLGNATSSSQIVSSALSYFDPFFTAIMFFLGVAFWASLLFLIYYGIEAFAHPTPFGRSSRLASMYDHVKSIIWSIIAIYLVVAVIAFAVNQASAAAGAGTTVNAGQLFYYVFVEPIVNGFKLFFGVTK*