3300000557: Alkaline sediment microbial communities from Lake Tanatar, Kulunda Steppe, Russia - 8KL_010_SED

Overview

Basic Information

• IMG/M Taxon OID: 3300000557
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063439 | Gp0053563 | Ga0000189
• Sample Name: Alkaline sediment microbial communities from Lake Tanatar, Kulunda Steppe, Russia - 8KL_010_SED
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 586845807
• Sequencing Scaffolds: 24
• Novel Protein Genes: 27
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	9
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Moritellaceae → Moritella → unclassified Moritella → Moritella sp.	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWB1_56_8	1
All Organisms → Viruses → environmental samples → uncultured marine virus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Russia: Kulunda Steppe, Lake Tanatar
• Coordinates
  • Lat. (^o): 51.39
  • Long. (^o): 79.48
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F008498	Metagenome / Metatranscriptome	332	Y
F015419	Metagenome / Metatranscriptome	255	Y
F015656	Metagenome / Metatranscriptome	253	Y
F021062	Metagenome / Metatranscriptome	220	Y
F021400	Metagenome / Metatranscriptome	219	Y
F032814	Metagenome / Metatranscriptome	179	Y
F066493	Metagenome	126	Y
F078742	Metagenome / Metatranscriptome	116	Y
F081948	Metagenome	113	Y
F082368	Metagenome	113	Y
F098192	Metagenome	104	Y
F105255	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SL_8KL_010_SEDDRAFT_10001108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	23387
SL_8KL_010_SEDDRAFT_10009223	Not Available	7053
SL_8KL_010_SEDDRAFT_10009246	Not Available	7042
SL_8KL_010_SEDDRAFT_10009388	All Organisms → cellular organisms → Bacteria	6973
SL_8KL_010_SEDDRAFT_10012081	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5834
SL_8KL_010_SEDDRAFT_10014700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5071
SL_8KL_010_SEDDRAFT_10034196	All Organisms → cellular organisms → Bacteria	2609
SL_8KL_010_SEDDRAFT_10045006	All Organisms → cellular organisms → Bacteria	2082
SL_8KL_010_SEDDRAFT_10046617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Moritellaceae → Moritella → unclassified Moritella → Moritella sp.	2024
SL_8KL_010_SEDDRAFT_10054734	Not Available	1765
SL_8KL_010_SEDDRAFT_10075445	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1297
SL_8KL_010_SEDDRAFT_10083422	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia	1179
SL_8KL_010_SEDDRAFT_10089096	Not Available	1108
SL_8KL_010_SEDDRAFT_10123647	Not Available	819
SL_8KL_010_SEDDRAFT_10134770	Not Available	757
SL_8KL_010_SEDDRAFT_10136423	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	749
SL_8KL_010_SEDDRAFT_10151693	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	683
SL_8KL_010_SEDDRAFT_10162910	Not Available	643
SL_8KL_010_SEDDRAFT_10163318	Not Available	641
SL_8KL_010_SEDDRAFT_10167857	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWB1_56_8	627
SL_8KL_010_SEDDRAFT_10178511	All Organisms → Viruses → environmental samples → uncultured marine virus	597
SL_8KL_010_SEDDRAFT_10201523	Not Available	542
SL_8KL_010_SEDDRAFT_10202889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	539
SL_8KL_010_SEDDRAFT_10215923	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
SL_8KL_010_SEDDRAFT_10001108	SL_8KL_010_SEDDRAFT_1000110821	F098192	MKCPLRTDPEGNFLSCYKDEYAWWVADAEIEGSATKGACAVLEVAVNGIILTIGDDEEEDFE*
SL_8KL_010_SEDDRAFT_10009223	SL_8KL_010_SEDDRAFT_100092235	F105255	MENKKFTETNTRLVDKHYSPLVIRKVTHYGFPIYVGIITDDDLSDLDEKIIEFMEANRKEGWVNDIQRQRNLSGAMTEFLNEHYKKAEGVAVVFYVDKMFISSLHGDFMNHTACRIEFYGLLTMSIGV*
SL_8KL_010_SEDDRAFT_10009246	SL_8KL_010_SEDDRAFT_100092462	F000388	MKVIKVTKEYYETEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKELKDAKD*
SL_8KL_010_SEDDRAFT_10009388	SL_8KL_010_SEDDRAFT_100093883	F098192	MKYPLGVDAEGNALDCDKDEWAWWVMDAEIEGSETKGAFAILEVAVNEIFATIGDDDEEGYN*
SL_8KL_010_SEDDRAFT_10012081	SL_8KL_010_SEDDRAFT_100120815	F098192	MRCPLRTDSEGSALDCYKDECAWWVADAEVSGSVQTGACAVLEVAVNGIFVTIGDDEE*
SL_8KL_010_SEDDRAFT_10014700	SL_8KL_010_SEDDRAFT_100147004	F105255	MESRVFTKLIDKHYSPLVIRKYTHYGFPIYIGLITDNDLSDLDDVAVNFMKEHSGEGWVNDIQKVRNLAGSFTEHLNNYYDRAEGVAVMLYVDKMFVSSLHGDFMNHSACRAEFYSLLNMSTGV*
SL_8KL_010_SEDDRAFT_10034196	SL_8KL_010_SEDDRAFT_100341963	F098192	MKCPLRIDSQGNASDCYRDECAWWVLDAEIEGSKTKGACAVLEVAANGIFVTIGDDDEE*
SL_8KL_010_SEDDRAFT_10045006	SL_8KL_010_SEDDRAFT_100450063	F098192	MKCPLRTDAQGNASDCYRXECAWWVVDAEIEGSLTKGACAVLEVAVNGIFITIGDDE*
SL_8KL_010_SEDDRAFT_10046617	SL_8KL_010_SEDDRAFT_100466172	F032814	MDSSKLICPPLFQANDANNMIVSTRIRVGRNLAEFPLGPGLTREQR*
SL_8KL_010_SEDDRAFT_10046617	SL_8KL_010_SEDDRAFT_100466173	F032814	MDFTKLNTPPFEAEEAKLIKSTRIRVGRNLAEYPLGPGLTKE*
SL_8KL_010_SEDDRAFT_10054734	SL_8KL_010_SEDDRAFT_100547343	F066493	MSDAREFDSGVVDVADELVQRHGTSGAIDRLQRRRQTSNDELQARCTEAIAWIRREVMDDT*
SL_8KL_010_SEDDRAFT_10075445	SL_8KL_010_SEDDRAFT_100754452	F015419	MKYELKIKDEHGNEHLYNVVRSSSDEPKNLNDFILEALSISEDKRQLPFLTQCPNGLEVHPSIKMKFENYGSSLLGDKLQAMMVTWRD*
SL_8KL_010_SEDDRAFT_10083422	SL_8KL_010_SEDDRAFT_100834222	F021400	MESALTVFPTRPARDPKGQGQELKLFSNYFTIGFDSNEIKGVNKYTCKFEPEVPDNSRKVRTLIIRTVKEKVKEYLDFFIEWGNCIYSLKKYEEVPKLETEHDGVKYVITIEWVQLMLQSDKDHMNFLKIFFNSMMRGLRFETIGRKCFNAAKAHSLDAHKIKVWPGFDARLIMKENGVLLNIDVCFKVVRQDTVLEFINDLKRKCEEKGLDSQEEISTALKGTTVVTK*
SL_8KL_010_SEDDRAFT_10089096	SL_8KL_010_SEDDRAFT_100890963	F000388	MKVIKVTKEYYETEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKELKDETNTISK*
SL_8KL_010_SEDDRAFT_10123647	SL_8KL_010_SEDDRAFT_101236472	F008498	MGTVSYKNQPAIDKTKGNVPLAGTSHIYKVNKRLWNDSIEDVLKKLFIGRTLHVCCGKSLLGDVRLDNDSENNPDIICDASDMSEFIKDEEFETVLCDPPYNGKFQWNHDLLHELHRVASKRIIFQHWFIPANKDGLYKKAQNKFELTELLCWQPKSYFGRVQMVSVFDRR*
SL_8KL_010_SEDDRAFT_10134770	SL_8KL_010_SEDDRAFT_101347701	F008498	MASVTYKNQPAVNKTKGNVPLAGTSHIYRVQKKLWNDSIEDVLQGLFIGRTLHVCCGKSLLGDVRLDADAENNPDIICDASKMQDFVKDNEFETVICDPPYNGNFQWNHDLLSELSRVASKRIIFQHWFIPANPTGTYKKAQEKFLLSDVLVWQPKTYFGRVQVVSVFDAVS*
SL_8KL_010_SEDDRAFT_10136423	SL_8KL_010_SEDDRAFT_101364232	F000388	MKVIKVTKEYFQTKDEKVYFFEPLEKEISVEDIQKIVDANEKLVKELTDGNK*
SL_8KL_010_SEDDRAFT_10151693	SL_8KL_010_SEDDRAFT_101516931	F015656	MKVFPEYFDNNQFEMARSNLHTIKRPYINFYKTINFKFQEYNANIKLQCVHWHRLIRACINVYGYFDFLKQIRCMEAVEYFKQCIQLNSFFSYHKKYFPQEYYNNEYWRVSPHYDNVFVDSD*
SL_8KL_010_SEDDRAFT_10162910	SL_8KL_010_SEDDRAFT_101629102	F078742	VEELSVGTGSDFVNNGRLQVEEDTSGDVLASTSLGEEGVEGIITTSDSLVRGHLSVGLDTVLEAEELPACVTNLDTGLTNVNG
SL_8KL_010_SEDDRAFT_10163318	SL_8KL_010_SEDDRAFT_101633182	F000388	MKVIRVTKEYFETEDEKVYFFEPLEKEISVEDMQKIVDANEKLIKELKDEN*
SL_8KL_010_SEDDRAFT_10167857	SL_8KL_010_SEDDRAFT_101678572	F000388	KEHYETEDEKVYFFEPLEKEISVEDIQKIVDANEKLVKELKDEHNSSN*
SL_8KL_010_SEDDRAFT_10169354	SL_8KL_010_SEDDRAFT_101693542	F081948	LQLLALLVHTLWLESWCRGPHSAILSQLLELELMLLLALLTFAPATCY*
SL_8KL_010_SEDDRAFT_10178511	SL_8KL_010_SEDDRAFT_101785111	F021062	DEKVYFFEPLEKEISVEDMQKIVDANDKFVKGELKDGNK*
SL_8KL_010_SEDDRAFT_10179377	SL_8KL_010_SEDDRAFT_101793771	F081948	LFRELGPVQLQALLVHTHWLASWCRGPHCAILNQLLELELMLLLALL
SL_8KL_010_SEDDRAFT_10201523	SL_8KL_010_SEDDRAFT_102015231	F008498	TKGSVPLAGTSHIYRVQKKLWNDSIEDVLQGLFIGKTLHVCXGKSLXGDVRLDADAENNPDXICDASNMKDFVKDNEFETVICDPPYNGNFQWNHDLLKELARVASKRIIFQHWFIPANPSGTYKKAQEKFLLSDVLVWQPKTYFGRVQVVSVFDAV*
SL_8KL_010_SEDDRAFT_10202889	SL_8KL_010_SEDDRAFT_102028892	F082368	MEIELWTFFDALMTWVIFPVVAMLWVHNQKIGHHEKDALRIMTLLNERKEQRDEDRQELNEALRDLRAAILRLDQRLADFAIGQSAQASLMQQQGMSTNRRDKG*
SL_8KL_010_SEDDRAFT_10215923	SL_8KL_010_SEDDRAFT_102159231	F098192	MMKCPLRIDSQGNASDCYRDECAWWVADAEIEGSKSKGACAVLEVAVNGIFVTIEDDEEE