3300000518: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2

Overview

Basic Information

• IMG/M Taxon OID: 3300000518
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0054785 | Ga0011590
• Sample Name: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3361323
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: El Dorado National Forest, Georgetown, California, USA
• Coordinates
  • Lat. (^o): 38.88
  • Long. (^o): -120.64
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012266	Metagenome / Metatranscriptome	282	Y
F037349	Metagenome / Metatranscriptome	168	Y
F037452	Metagenome / Metatranscriptome	168	Y
F040197	Metagenome / Metatranscriptome	162	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
MB_CA_OM3_M2DRAFT_100005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2549
MB_CA_OM3_M2DRAFT_100068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1456
MB_CA_OM3_M2DRAFT_100257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	816
MB_CA_OM3_M2DRAFT_100487	All Organisms → cellular organisms → Bacteria	602

Sequences

Scaffold ID	Protein ID	Family	Sequence
MB_CA_OM3_M2DRAFT_100005	MB_CA_OM3_M2DRAFT_1000054	F037452	MGSSFLSEVDDTSILRTGALHRYHYPLTWLSASRLLLPRSGLERSDFV
MB_CA_OM3_M2DRAFT_100068	MB_CA_OM3_M2DRAFT_1000682	F012266	YEAVLALQLSFFEVSALSGSLVSSAPERPCDDVCGLNALLSESGGDAADFLD*
MB_CA_OM3_M2DRAFT_100257	MB_CA_OM3_M2DRAFT_1002571	F040197	MDPAVAGLDFAKAGIVLANMIESYLAGGAPPSNPEG
MB_CA_OM3_M2DRAFT_100487	MB_CA_OM3_M2DRAFT_1004872	F037349	MINPPQVLPEEPTAVTPHGGFCGGKSQQWLRYPTMPHVRFCAGVLSN