3300000517: Marine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 3

Overview

Basic Information

• IMG/M Taxon OID: 3300000517
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053056 | Gp0053373 | Ga0026755
• Sample Name: Marine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 3
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 120470807
• Sequencing Scaffolds: 23
• Novel Protein Genes: 23
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	8
Not Available	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED164	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Cabo Rojo, Puerto Rico
• Coordinates
  • Lat. (^o): 17.950617
  • Long. (^o): -67.193417
  • Alt. (m): N/A
  • Depth (m): .05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007024	Metagenome / Metatranscriptome	359	Y
F017294	Metagenome / Metatranscriptome	241	Y
F027356	Metagenome / Metatranscriptome	195	Y
F037490	Metagenome / Metatranscriptome	168	Y
F037639	Metagenome / Metatranscriptome	167	Y
F038111	Metagenome	166	N
F046336	Metagenome / Metatranscriptome	151	Y
F054790	Metagenome / Metatranscriptome	139	Y
F061556	Metagenome	131	Y
F066803	Metagenome / Metatranscriptome	126	Y
F068768	Metagenome / Metatranscriptome	124	Y
F079823	Metagenome	115	Y
F087231	Metagenome / Metatranscriptome	110	Y
F094957	Metagenome	105	N
F097996	Metagenome	104	N
F098946	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
PR_CR_10_Liq_3_inCRDRAFT_1000776	All Organisms → cellular organisms → Bacteria → Proteobacteria	8523
PR_CR_10_Liq_3_inCRDRAFT_1001216	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6793
PR_CR_10_Liq_3_inCRDRAFT_1001571	All Organisms → cellular organisms → Bacteria	6001
PR_CR_10_Liq_3_inCRDRAFT_1002423	All Organisms → Viruses → Predicted Viral	4829
PR_CR_10_Liq_3_inCRDRAFT_1002787	All Organisms → Viruses → Predicted Viral	4467
PR_CR_10_Liq_3_inCRDRAFT_1003309	All Organisms → Viruses → Predicted Viral	4095
PR_CR_10_Liq_3_inCRDRAFT_1004373	Not Available	3555
PR_CR_10_Liq_3_inCRDRAFT_1004567	All Organisms → Viruses → Predicted Viral	3462
PR_CR_10_Liq_3_inCRDRAFT_1006853	Not Available	2762
PR_CR_10_Liq_3_inCRDRAFT_1009322	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2287
PR_CR_10_Liq_3_inCRDRAFT_1010097	All Organisms → Viruses → Predicted Viral	2176
PR_CR_10_Liq_3_inCRDRAFT_1010397	All Organisms → Viruses → Predicted Viral	2134
PR_CR_10_Liq_3_inCRDRAFT_1021336	All Organisms → Viruses → Predicted Viral	1248
PR_CR_10_Liq_3_inCRDRAFT_1026060	All Organisms → Viruses → Predicted Viral	1045
PR_CR_10_Liq_3_inCRDRAFT_1027327	Not Available	1000
PR_CR_10_Liq_3_inCRDRAFT_1028170	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	972
PR_CR_10_Liq_3_inCRDRAFT_1030003	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	915
PR_CR_10_Liq_3_inCRDRAFT_1030644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.	896
PR_CR_10_Liq_3_inCRDRAFT_1037695	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED164	737
PR_CR_10_Liq_3_inCRDRAFT_1038807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	717
PR_CR_10_Liq_3_inCRDRAFT_1047147	Not Available	593
PR_CR_10_Liq_3_inCRDRAFT_1048604	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	575
PR_CR_10_Liq_3_inCRDRAFT_1051733	Not Available	542

Sequences

Scaffold ID	Protein ID	Family	Sequence
PR_CR_10_Liq_3_inCRDRAFT_1000776	PR_CR_10_Liq_3_inCRDRAFT_100077617	F017294	MRVTHLNKGGFGMAAKTACGRSVLRTPISVNWEEFKQEREEARCTKCVASKQFSFNLKMDEKKR*
PR_CR_10_Liq_3_inCRDRAFT_1001216	PR_CR_10_Liq_3_inCRDRAFT_10012162	F098946	MARITCRTPSTGKALRVTRANVPTSFTSLIDAPDFSVPDTSVKFAERDPTDDGRAIRPGEIFFLSPLAAYNKDAANTRWIEVRLVSEDGVTIEFARAEVPANDTAYIPLQGRSLFKRDPDAALGDRVEIRAEADNTFDVWSAVEEKLSNEHIGVV*
PR_CR_10_Liq_3_inCRDRAFT_1001571	PR_CR_10_Liq_3_inCRDRAFT_10015719	F079823	MPTTTAKSKAGRVTVRLDDRDIKSILRAFSKMDKQANVDLKDLSKEISEDLVSEFRNAARGTRWYPEQASFVAQSARVARDRTPSVTLGGAKRYTTDDGRRVATGSILFLSEFGSPEYRQRERFRNQAQRAAGARGGLQGPPRSPREGRGNRGWW
PR_CR_10_Liq_3_inCRDRAFT_1002423	PR_CR_10_Liq_3_inCRDRAFT_10024238	F061556	MLNNQTYRLATKTKTGDVVQFGPRMPMAIAERKRKAVAALTSHPVYIVNTTSA*
PR_CR_10_Liq_3_inCRDRAFT_1002787	PR_CR_10_Liq_3_inCRDRAFT_100278714	F054790	MTLNEAWASVYAALPDNAFDYVGKPFYNDDDGSIQLWDG
PR_CR_10_Liq_3_inCRDRAFT_1003309	PR_CR_10_Liq_3_inCRDRAFT_10033095	F097996	MAINRDGMHPRYLGWQVDWPVFVKMPFSADGKNWKSREHFNWAEREIEPETVARLYAQGFIYHNSELAKVNKVGDRLGEMNSEDLYRLVVQLNAIVKERTTTTKEYNDKRCKQSKIEDKQRGLIRRFLNRNPWIVEDFYRLRDYILGES*
PR_CR_10_Liq_3_inCRDRAFT_1004373	PR_CR_10_Liq_3_inCRDRAFT_10043734	F094957	MKALTEYMDQINAHLAVFGESPLDPYRDYAEVRRAVEVLGSPEILTKDGTLTRAEVEARTNTWLDAIAELDRIEQELTA*
PR_CR_10_Liq_3_inCRDRAFT_1004567	PR_CR_10_Liq_3_inCRDRAFT_10045671	F037490	PDRLDALVWALTDLCLGSYQKPKLQLVYSNAKGLR*
PR_CR_10_Liq_3_inCRDRAFT_1006853	PR_CR_10_Liq_3_inCRDRAFT_10068535	F061556	MQNANTYRLATKTKTGDVVQFGPLMSMAIAERKRKAMVALTSYPVYIVNTRAE*
PR_CR_10_Liq_3_inCRDRAFT_1009322	PR_CR_10_Liq_3_inCRDRAFT_10093222	F094957	MKALTQYMDQINAHLAVFGEAPLDPYRDYAEVRRAVEVLGSPEILTKDGTLTRAEVEARTNTWLDAITELDRIEQELTA*
PR_CR_10_Liq_3_inCRDRAFT_1010097	PR_CR_10_Liq_3_inCRDRAFT_10100974	F037490	IGSPDRLDALVWALTDLCLGSYQKPKLQLVYSNAKGLR*
PR_CR_10_Liq_3_inCRDRAFT_1010397	PR_CR_10_Liq_3_inCRDRAFT_10103971	F054790	TLNEAWASVYAALPDNAFDYVGKPFYNDDDGSIQLWDGSKMVTYYSAPF*
PR_CR_10_Liq_3_inCRDRAFT_1021336	PR_CR_10_Liq_3_inCRDRAFT_10213361	F007024	MNVQQGDRAIIVFSINPENVGRVVNVAEYIGKFANGEQFQFRGMPCQALVHDHYWWIEADDLSIALGPSPRAYIADSWLRKIIPDNEKTSKKEDIDIFA*
PR_CR_10_Liq_3_inCRDRAFT_1026060	PR_CR_10_Liq_3_inCRDRAFT_10260602	F087231	LENVRASSKELGEVIANLPFAFGEASEKIRYSDVPPALQKLIEDMITRVEDKIGQEDADVATQDLKNFMAGGDYYNQSEISSQMAKLLRLLT*
PR_CR_10_Liq_3_inCRDRAFT_1027327	PR_CR_10_Liq_3_inCRDRAFT_10273272	F061556	MQNAITYRLATKTNTGDVIQFGPLMSMAIAERKRKAMVALTSYPVYIVNTRAE*
PR_CR_10_Liq_3_inCRDRAFT_1028170	PR_CR_10_Liq_3_inCRDRAFT_10281703	F094957	MKALKEYMEEINAHLVTLGEVPLDPYHDYAEVRLAVEALGIPKILTKNDTLAQEEVVARTNKWLDAIAELDAIKQELASKEK*
PR_CR_10_Liq_3_inCRDRAFT_1030003	PR_CR_10_Liq_3_inCRDRAFT_10300032	F068768	MSNLWVEVEELGEYADSDYAYEAAKVASNILWAMSGRKFSGITRVTERYVSAYDPYLRTGAARLTYTPQLINGQVENVVGGGFGRYSNRDYLGDGTNGLTRVRLRGRKVVQVHNMRDRDGNIIDPSTYFLGDHSTIYGAPNATWSATYVEVTYTYGSPPPTSGRAAARLLATELVKLY
PR_CR_10_Liq_3_inCRDRAFT_1030644	PR_CR_10_Liq_3_inCRDRAFT_10306444	F046336	CREGADATGDMYVRYFGESSFTVGHSFEVSGAGGEYTYDFPVPLRIPEKSDIDVRASVRSNNARITAAFDILLEAE*
PR_CR_10_Liq_3_inCRDRAFT_1037695	PR_CR_10_Liq_3_inCRDRAFT_10376952	F027356	MKINGIDMNDRGDPISRFDLEEAIMNAWRTSDDIKALYKSSEYMDEDQLMNALLGLEIFAEMRFNELWSTFEKCINNGVFDDNAKLRDEITKAL
PR_CR_10_Liq_3_inCRDRAFT_1038807	PR_CR_10_Liq_3_inCRDRAFT_10388072	F066803	FKNHSTEQKQNIPIKKESSYAWAKVWYEDDTVEPINTNQIITERKNFFKGWLCNIHESLHIHPNGRIQAASCGVGPIVGNIVKGEFDTNLAQGVWCPKTHCHCAADFNISKARVEYADRIR*
PR_CR_10_Liq_3_inCRDRAFT_1047147	PR_CR_10_Liq_3_inCRDRAFT_10471473	F037639	IDPSKIVATLTAAIQEQQAQIEALQAEVQALKDKA*
PR_CR_10_Liq_3_inCRDRAFT_1048604	PR_CR_10_Liq_3_inCRDRAFT_10486043	F046336	VPAGYTGYLLKGTCTCRASADATGDMFVRYFGDSSFVVGHSFEVSGSGGEYTYDFPVPLRIPEKSDIDVRASVRSNNARITAAFDILLEAD*
PR_CR_10_Liq_3_inCRDRAFT_1051733	PR_CR_10_Liq_3_inCRDRAFT_10517332	F038111	MIPSKVPVVNKPDYTIWLENYRNIATFIHADVHKYNKSVRKEFGEDLDTLLKLHNFPLYVLTDKDNTKLKKFMSIYGLVLDHTPLCDDGVEREVYRLDRR*