3300000227: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- AS07_7

Overview

Basic Information

• IMG/M Taxon OID: 3300000227
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063446 | Gp0053357 | Ga0026471
• Sample Name: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- AS07_7
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 300437395
• Sequencing Scaffolds: 16
• Novel Protein Genes: 18
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → cave → groundwater
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Acquasanta Terme, Italy
• Coordinates
  • Lat. (^o): 42.766667
  • Long. (^o): 13.4
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000842	Metagenome / Metatranscriptome	865	Y
F001564	Metagenome / Metatranscriptome	670	Y
F002525	Metagenome / Metatranscriptome	552	Y
F016728	Metagenome / Metatranscriptome	245	Y
F020177	Metagenome / Metatranscriptome	225	Y
F046176	Metagenome	151	N
F046219	Metagenome	151	Y
F050966	Metagenome / Metatranscriptome	144	Y
F053659	Metagenome / Metatranscriptome	141	Y
F064893	Metagenome / Metatranscriptome	128	Y
F075821	Metagenome	118	Y
F088437	Metagenome	109	Y
F093503	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
TB_AS07_7DRAFT_10000050	All Organisms → cellular organisms → Bacteria	88037
TB_AS07_7DRAFT_10007291	All Organisms → cellular organisms → Bacteria	6032
TB_AS07_7DRAFT_10007374	All Organisms → cellular organisms → Bacteria	5985
TB_AS07_7DRAFT_10007476	All Organisms → cellular organisms → Bacteria → Proteobacteria	5920
TB_AS07_7DRAFT_10008153	All Organisms → cellular organisms → Bacteria	5524
TB_AS07_7DRAFT_10023892	All Organisms → cellular organisms → Bacteria	2204
TB_AS07_7DRAFT_10032251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1648
TB_AS07_7DRAFT_10034858	All Organisms → cellular organisms → Bacteria	1516
TB_AS07_7DRAFT_10035370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	1494
TB_AS07_7DRAFT_10037459	All Organisms → cellular organisms → Bacteria	1407
TB_AS07_7DRAFT_10040314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1304
TB_AS07_7DRAFT_10049184	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1050
TB_AS07_7DRAFT_10049834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium	1036
TB_AS07_7DRAFT_10055470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	921
TB_AS07_7DRAFT_10076290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	664
TB_AS07_7DRAFT_10091399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	562

Sequences

Scaffold ID	Protein ID	Family	Sequence
TB_AS07_7DRAFT_10000050	TB_AS07_7DRAFT_1000005099	F020177	MDNNIENIDLNNTYWDRVKGFVSELKIDARWLLRNKDDDKSIGSLRIVSHPDLPPGYLRAFFTYVTSIRKKNKTEKMKTVENYMIDINELEVYSIADDIKTETVKYEAPFKKLENMFGVKIFEK*
TB_AS07_7DRAFT_10007291	TB_AS07_7DRAFT_100072912	F075821	MIELSFRQFHDGQYRERDYELYVMKNGLGDILYIGISTTDVWGRWFAWGGHMLWDGNVIYGDSTIGTKIENHLPESLDWKIQLWTLKDCLKFCKAELPGDTSNLTIQHVEPIMIRKLSPSLNVTYNLNPGRDTTPKSDKELKWEKYVDNAYDEIFNKK*
TB_AS07_7DRAFT_10007374	TB_AS07_7DRAFT_100073747	F093503	MKKYKVKIKHTDKEEIIKANSELEARVKFCEKNNLNYTHLAGRLEIILNNKPLQNNL*
TB_AS07_7DRAFT_10007476	TB_AS07_7DRAFT_100074766	F046176	VLGLYSYLVDAAAMCEQRQYRGLKHFSIFRENERFKSSVVLVPFNQMRDLHTLALAALRSGDVLAATKEQYVVQFIREGLQRQLPLINMQLKKQGMRAISLKSLKK*
TB_AS07_7DRAFT_10008153	TB_AS07_7DRAFT_100081532	F064893	MPKIIRYEFMGSWFRFWLMCLTVVGIPFAVLYLIDGTLRIEHEIDDPERFVEEFRSGRLTKKR*
TB_AS07_7DRAFT_10023892	TB_AS07_7DRAFT_100238922	F000842	VLDLPGVAGGXTWVQSNAEQERPCLAASSGKDRAYKAGRLKSRGAGRESERSVVAEKARKITRWREGALL*
TB_AS07_7DRAFT_10032251	TB_AS07_7DRAFT_100322511	F002525	VDSVWEQEKLEARKMLENAAESHTSGARFVSPLCFFA*
TB_AS07_7DRAFT_10032935	TB_AS07_7DRAFT_100329352	F050966	MKTRHSDGTEALSQEMESNGSATPKSRRHPLTLPPDGWESARSQAVCVA*
TB_AS07_7DRAFT_10034858	TB_AS07_7DRAFT_100348583	F046219	LLRRALDLRAALKLGVRINLDEIRADEFQALLVLEEEQTKVEQERVAVSPG*
TB_AS07_7DRAFT_10035370	TB_AS07_7DRAFT_100353701	F016728	TCVWAGVDNAWEQEKLEARKMLENAADSHTSGARFVRLFFVAK*
TB_AS07_7DRAFT_10037459	TB_AS07_7DRAFT_100374592	F001564	VPGIPGPKLLSGERPERPSLRFLIHWALRREELCDPGLCPDAPDEGDRCDHCPLDKLDAAQSSEAGLLLRRALDLRAALKLGVRLGLDEIRADEFRALVVLEEEQEKLDRERLDASRP*
TB_AS07_7DRAFT_10040314	TB_AS07_7DRAFT_100403143	F002525	CVWAGVDSAWEQEKLEARKMLENAADSHTSGARFVRLRSNFN*
TB_AS07_7DRAFT_10046457	TB_AS07_7DRAFT_100464573	F002525	EDNAWEQKKLEARKMPVSRDESHQSGARFVRCGID*
TB_AS07_7DRAFT_10049184	TB_AS07_7DRAFT_100491843	F000324	MSTILIQPKFTFSINGATINTFHANIGEGLPKHQHIYAHATQCHNGSIIVRKENNTYTLTKDTQPILLKENEWHEIEALEDNTVFCNVFAEGLY*
TB_AS07_7DRAFT_10049834	TB_AS07_7DRAFT_100498342	F016728	LTVCVTCVWAGVDSAWEQEKLEARKMLVNRADSHTSGARFVGLLFALRR*
TB_AS07_7DRAFT_10055470	TB_AS07_7DRAFT_100554701	F088437	LWSLVQWLGQLSPAQLNLALGVEPPSHVIEDEKHAKECGEKAYVPMVYAPKEALIWWVDYVDSVSEATLRDSLERFKAISQRLAHITGATVDGWDPAQKALQAAFPGITLVECHMHALLKLGQHLATFKRQRKKAGQPVSEREETHIRQAFVRVLQAPTPEAYQKALEELPDAFEHESLASRKDSLRTKQALFQAWTSDAKLAVVTTALDQCMKFLNRKLDNMQTLHGPRSGLATVNAWAITRNCWRFLKGAKRAGLSPLELAGADFLGIPWMQLVNLLLCAWPTVALAAGALLLST*
TB_AS07_7DRAFT_10076290	TB_AS07_7DRAFT_100762901	F053659	MPSVAETKPNRQNRTVTLHLGNTLAEYQAMISTEEGIQELIGRVEIADSLNWGPLADGHRVDCPRCLQFTHHDAYLRWAHHFDGTRSPVTIVRVRCLECGAVFSIQPSFIVRYKRYDTDAIEKAMTLLFIAEGSYRMVNVSQALGIDTRHAGTWLALEEAEPMAISPMALWSLVQWLG
TB_AS07_7DRAFT_10091399	TB_AS07_7DRAFT_100913992	F002525	VWAGVDSAWEQEKPEARKMLENAADSHTSGGRVRG*