3300000186: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 2000m

Overview

Basic Information

• IMG/M Taxon OID: 3300000186
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0053644 | Ga0026217
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2010 P16 2000m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31667212
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium	1
Not Available	6
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine aphotic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: P16, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.283333
  • Long. (^o): -134.666667
  • Alt. (m): N/A
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002006	Metagenome / Metatranscriptome	605	Y
F008912	Metagenome / Metatranscriptome	326	Y
F013190	Metagenome / Metatranscriptome	273	Y
F025141	Metagenome / Metatranscriptome	203	Y
F027203	Metagenome	195	Y
F031535	Metagenome	182	N
F034336	Metagenome / Metatranscriptome	175	N
F050430	Metagenome / Metatranscriptome	145	N
F064803	Metagenome	128	Y
F078841	Metagenome / Metatranscriptome	116	N
F099440	Metagenome / Metatranscriptome	103	N
F101336	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
LPfeb10P162000mDRAFT_c1002770	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1416
LPfeb10P162000mDRAFT_c1003440	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium	1239
LPfeb10P162000mDRAFT_c1004055	Not Available	1131
LPfeb10P162000mDRAFT_c1004360	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1079
LPfeb10P162000mDRAFT_c1006303	Not Available	865
LPfeb10P162000mDRAFT_c1006824	All Organisms → cellular organisms → Bacteria	825
LPfeb10P162000mDRAFT_c1007011	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	813
LPfeb10P162000mDRAFT_c1010823	Not Available	635
LPfeb10P162000mDRAFT_c1012280	All Organisms → cellular organisms → Archaea	590
LPfeb10P162000mDRAFT_c1013336	Not Available	563
LPfeb10P162000mDRAFT_c1013721	Not Available	554
LPfeb10P162000mDRAFT_c1014035	Not Available	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
LPfeb10P162000mDRAFT_c1002770	LPfeb10P162000mDRAFT_10027704	F013190	CDGSIPLNEMPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK*
LPfeb10P162000mDRAFT_c1003440	LPfeb10P162000mDRAFT_10034402	F099440	VXLIILKNQVLNGAKLIDGNGRKIMVCGLHNTGQEKYIENFSQWTCNLLASCIVYID*
LPfeb10P162000mDRAFT_c1004055	LPfeb10P162000mDRAFT_10040551	F027203	QGSLLNDFVTTAPAPAWYRRSKTSSDIPKMPEARIVGLSSVSVPIEVESVGFTLNIFSPFSYNS*
LPfeb10P162000mDRAFT_c1004360	LPfeb10P162000mDRAFT_10043602	F025141	MIQCEYCDKNFIESMNGLAEKTFHEMLHAPEIVNQ*
LPfeb10P162000mDRAFT_c1006303	LPfeb10P162000mDRAFT_10063031	F101336	NSFIPTKIALVGEPSLTSVDTFVSKGTAKTSFCGNSWQATY*
LPfeb10P162000mDRAFT_c1006824	LPfeb10P162000mDRAFT_10068241	F008912	VKNLVVTLGITGCGKSTWLKDKSPVIETDDLRVELLDDISNVTQEGFIFGTAAKRISKLFDTHDTVYFGATLVDSKHRIPFLQSIKDMCKHKFVIEMIIFPGIPELSKERIAKALKDGIQRADSIQFVDEQYEQYLHTISILDDEKDFYRMIKRVDNPNDEARKINNRVEDISEKLDMIIEQNDQ
LPfeb10P162000mDRAFT_c1007011	LPfeb10P162000mDRAFT_10070111	F031535	VAIASANQLRGLTNEVNHFQVPFKTFEFYTVNIE*
LPfeb10P162000mDRAFT_c1010823	LPfeb10P162000mDRAFT_10108231	F034336	MKINVKVLSAFLLIVNLYAVENPEDVKPTIQNGKGLFVLLDDTSWISQIVAEAYILGTIDGIITRKRPLRALCGNKVDKALLTIPNGIEIERIISIVHQFLKDNXENLYKPSIALIRQSLLRAFDQYDIAGY*LSYVKIIQTVNSPNFQNI
LPfeb10P162000mDRAFT_c1012280	LPfeb10P162000mDRAFT_10122801	F078841	MFDDSDVVHSESRSDKAKRAISEYLDEYGQVRATELKKEVCDERGICSEKIFYRCLFELVKSKRIIKNEQNRGNVSYYKPDWGVYENMINTDVIKQGTSTVRILAEVGRHENEVMQLTLLKMAFGNIMSMYASMTLITQQPSKAKTSAVITNTXKNTIPELLEMFSIALEKCGKNRSR
LPfeb10P162000mDRAFT_c1013336	LPfeb10P162000mDRAFT_10133361	F050430	MDKKLKENIVVGIKIVGMLFFLIVLITTLVWPGGVDTLANLFSA
LPfeb10P162000mDRAFT_c1013721	LPfeb10P162000mDRAFT_10137212	F064803	TINNPSPSPNNVRPKHKKRKVEIFGLKFRGLSELHETLGIFFKDKNMFKCYLLLYN*
LPfeb10P162000mDRAFT_c1014035	LPfeb10P162000mDRAFT_10140351	F002006	HSYLRYSVMPEELQSVKLQVGLLQQDVEARGKQIDALLSKLDSTADKIVELTVEIKSLNSRQERHSKVDDEIRSELKLLHSRAGSIHDEIGKSERRVSDSIHKLEERVRAVEQYKSKL