3300000143: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 10m

Overview

Basic Information

• IMG/M Taxon OID: 3300000143
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0053421 | Ga0026198
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 10m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13836185
• Sequencing Scaffolds: 3
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Funariidae → Funariales → Funariaceae → Physcomitrium → Physcomitrium patens	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet 53, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015265	Metagenome / Metatranscriptome	256	Y
F025141	Metagenome / Metatranscriptome	203	Y
F031720	Metagenome	182	N
F093220	Metagenome / Metatranscriptome	106	N
F103879	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SI53jan11_10mDRAFT_c100064	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Bryophyta → Bryophytina → Bryopsida → Funariidae → Funariales → Funariaceae → Physcomitrium → Physcomitrium patens	5824
SI53jan11_10mDRAFT_c101263	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1349
SI53jan11_10mDRAFT_c103736	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	658

Sequences

Scaffold ID	Protein ID	Family	Sequence
SI53jan11_10mDRAFT_c100064	SI53jan11_10mDRAFT_1000641	F103879	INVVLSTQMTEMNPLPFTKETVYHANAATLVTWGIFDLLSEIAFFKQTNRKLQGTSEIILGMETCYDTYAHEFAEQLGDRFSPLGWDSQLERVQAGIDQVNPESRLMTHFRRLTQKNKETVGVGKSWVQVTQSGLSRIVESRGDLKRDRQREARFSLRNWSYRQEFALARRTLYWRERGQMRFHSSQYNMMNVTSIDHNQNSRLTRLYFRDMLIESRQKRALRVSIEPTIYDTFATRKLVVRARKPVAEASQLLAGDLLHVWFDWAKTYSNL*
SI53jan11_10mDRAFT_c101263	SI53jan11_10mDRAFT_1012632	F025141	MIQCEYCPRGFIETTTGLAEKTFHELLHEPEVVNK*
SI53jan11_10mDRAFT_c102057	SI53jan11_10mDRAFT_1020571	F031720	KMNISLNTVLTEAYEISSGLQERLEGIYPIKCNLNFSGLPAMSLCLDHREQRLKSSASKNPQFTLIIDSNTTWNLLKEQTIPSDKIEGXSELALMFLIILAESNIDLELLIYKNFGTVPGLIIRKILSQDFLNDNQKAENIRVRSLQTSLRNISIRMDRMEQKQAL*
SI53jan11_10mDRAFT_c103448	SI53jan11_10mDRAFT_1034483	F093220	SNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN*
SI53jan11_10mDRAFT_c103736	SI53jan11_10mDRAFT_1037361	F015265	MYPDHMTKNPKLIETNAIVNLNNVGLPVFLNPIYAIIPMASPTKNPTRFSIFSNKNSNGV