NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093220

Metagenome / Metatranscriptome Family F093220

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093220
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 51 residues
Representative Sequence ELNKSNVKIDRMQENLNIIDKNVRVLEKIIDTAENNLIVAINNACNVKTN
Number of Associated Samples 96
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.27 %
% of genes near scaffold ends (potentially truncated) 71.70 %
% of genes from short scaffolds (< 2000 bps) 67.92 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (74.528 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine
(21.698 % of family members)
Environment Ontology (ENVO) Unclassified
(68.868 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(92.453 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 76.00%    β-sheet: 0.00%    Coil/Unstructured: 24.00%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF13561adh_short_C2 0.94
PF00106adh_short 0.94
PF07995GSDH 0.94
PF07661MORN_2 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG2133Glucose/arabinose dehydrogenase, beta-propeller foldCarbohydrate transport and metabolism [G] 0.94
COG2849Antitoxin component YwqK of the YwqJK toxin-antitoxin moduleDefense mechanisms [V] 0.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms74.53 %
UnclassifiedrootN/A25.47 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573028|GS313G0146KB_1112118788887All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580915Open in IMG/M
3300000115|DelMOSum2011_c10044497All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801824Open in IMG/M
3300000226|SI34jun09_135mDRAFT_1076246All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580599Open in IMG/M
3300001346|JGI20151J14362_10216097All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580514Open in IMG/M
3300001348|JGI20154J14316_10104558All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580890Open in IMG/M
3300001351|JGI20153J14318_10035716All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5802050Open in IMG/M
3300001354|JGI20155J14468_10153483All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580733Open in IMG/M
3300001355|JGI20158J14315_10114499All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580891Open in IMG/M
3300003620|JGI26273J51734_10201132All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580501Open in IMG/M
3300004273|Ga0066608_1173889All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580520Open in IMG/M
3300004277|Ga0066611_10162156All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580775Open in IMG/M
3300008253|Ga0105349_10023094All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5802633Open in IMG/M
3300009071|Ga0115566_10243630All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801079Open in IMG/M
3300009071|Ga0115566_10437181All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580749Open in IMG/M
3300009077|Ga0115552_1158363All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580947Open in IMG/M
3300009440|Ga0115561_1322956All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580568Open in IMG/M
3300009440|Ga0115561_1349973All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580542Open in IMG/M
3300009442|Ga0115563_1352758All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580529Open in IMG/M
3300009449|Ga0115558_1404975All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580532Open in IMG/M
3300009476|Ga0115555_1050184All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801883Open in IMG/M
3300009495|Ga0115571_1231689All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580747Open in IMG/M
3300009497|Ga0115569_10088358All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801592Open in IMG/M
3300009498|Ga0115568_10085770All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801582Open in IMG/M
3300009505|Ga0115564_10072053All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801988Open in IMG/M
3300009505|Ga0115564_10477536All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580603Open in IMG/M
3300012524|Ga0129331_1280477All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801014Open in IMG/M
3300017697|Ga0180120_10333692All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580602Open in IMG/M
3300017735|Ga0181431_1095942All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580665Open in IMG/M
3300017782|Ga0181380_1071642All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801220Open in IMG/M
3300020175|Ga0206124_10175569All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580854Open in IMG/M
3300020182|Ga0206129_10065374All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5802132Open in IMG/M
3300020185|Ga0206131_10230584All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580880Open in IMG/M
3300020185|Ga0206131_10247792All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580833Open in IMG/M
3300020185|Ga0206131_10343437All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580647Open in IMG/M
3300020187|Ga0206130_10132678All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801353Open in IMG/M
3300020358|Ga0211689_1021950All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5802096Open in IMG/M
3300021375|Ga0213869_10364731All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580599Open in IMG/M
3300021378|Ga0213861_10577538All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580520Open in IMG/M
3300021959|Ga0222716_10769894All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580503Open in IMG/M
3300021960|Ga0222715_10590650All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580575Open in IMG/M
(restricted) 3300022931|Ga0233433_10164843All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801003Open in IMG/M
3300024180|Ga0228668_1064555All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580699Open in IMG/M
3300024235|Ga0228665_1131001All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580515Open in IMG/M
(restricted) 3300024243|Ga0233436_1028523All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5802388Open in IMG/M
3300024250|Ga0228677_1125772All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580508Open in IMG/M
(restricted) 3300024261|Ga0233439_10268879All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580745Open in IMG/M
(restricted) 3300024264|Ga0233444_10419105All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580549Open in IMG/M
3300024293|Ga0228651_1094354All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580684Open in IMG/M
3300024318|Ga0233400_1125958All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580551Open in IMG/M
3300024319|Ga0228670_1119182All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580512Open in IMG/M
3300024326|Ga0228652_1135263All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580537Open in IMG/M
3300025594|Ga0209094_1040787All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801264Open in IMG/M
3300025637|Ga0209197_1161997All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580594Open in IMG/M
3300025640|Ga0209198_1091202All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580974Open in IMG/M
3300025729|Ga0209558_1140992All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580813Open in IMG/M
3300025816|Ga0209193_1100953All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580718Open in IMG/M
3300025822|Ga0209714_1077766All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580975Open in IMG/M
3300025830|Ga0209832_1049215All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801519Open in IMG/M
3300025874|Ga0209533_1139891All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801106Open in IMG/M
3300025890|Ga0209631_10241061All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580906Open in IMG/M
3300026443|Ga0247559_1132391All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580503Open in IMG/M
3300026466|Ga0247598_1150465All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580554Open in IMG/M
3300026500|Ga0247592_1161215All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580534Open in IMG/M
3300026504|Ga0247587_1138171All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580599Open in IMG/M
3300027672|Ga0209383_1232134All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580517Open in IMG/M
3300027833|Ga0209092_10036724All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → beta proteobacterium KB133116Open in IMG/M
3300027833|Ga0209092_10567028All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580572Open in IMG/M
3300028008|Ga0228674_1144366All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580797Open in IMG/M
3300028126|Ga0228648_1118818All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580515Open in IMG/M
3300028131|Ga0228642_1163154All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580525Open in IMG/M
3300028132|Ga0228649_1135938All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580592Open in IMG/M
3300028189|Ga0257127_1104861All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580824Open in IMG/M
3300028282|Ga0256413_1347961All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580519Open in IMG/M
3300028284|Ga0257120_1030260All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801605Open in IMG/M
3300028397|Ga0228639_1104637All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580706Open in IMG/M
3300031519|Ga0307488_10309660All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801013Open in IMG/M
3300031851|Ga0315320_10209803All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5801430Open in IMG/M
3300031851|Ga0315320_11010686All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580502Open in IMG/M
3300032073|Ga0315315_10120821All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 5802441Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine21.70%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater20.75%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine7.55%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine7.55%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine6.60%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater6.60%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine4.72%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.77%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh3.77%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine2.83%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.83%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.89%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater1.89%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.94%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.94%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.94%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.94%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine0.94%
Methane Seep MesocosmEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm0.94%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine0.94%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.94%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573028Estuarine microbial communities from Columbia River, sample from South Channel ETM site, CMGS313-FOS-0p8-ETM-15mEnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000143Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 53 01/11/11 10mEnvironmentalOpen in IMG/M
3300000226Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 135mEnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300001346Pelagic Microbial community sample from North Sea - COGITO 998_met_01EnvironmentalOpen in IMG/M
3300001348Pelagic Microbial community sample from North Sea - COGITO 998_met_04EnvironmentalOpen in IMG/M
3300001351Pelagic Microbial community sample from North Sea - COGITO 998_met_03EnvironmentalOpen in IMG/M
3300001354Pelagic Microbial community sample from North Sea - COGITO 998_met_05EnvironmentalOpen in IMG/M
3300001355Pelagic Microbial community sample from North Sea - COGITO 998_met_08EnvironmentalOpen in IMG/M
3300003500Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNAEnvironmentalOpen in IMG/M
3300003620Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNAEnvironmentalOpen in IMG/M
3300004273Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_135mEnvironmentalOpen in IMG/M
3300004276Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165mEnvironmentalOpen in IMG/M
3300004277Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200mEnvironmentalOpen in IMG/M
3300008253Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson CanyonEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009442Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519EnvironmentalOpen in IMG/M
3300009449Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426EnvironmentalOpen in IMG/M
3300009467Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530EnvironmentalOpen in IMG/M
3300009476Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009498Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426EnvironmentalOpen in IMG/M
3300009505Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300012524Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300018413Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020174Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300020188Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020358Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX555925-ERR599009)EnvironmentalOpen in IMG/M
3300020396Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)EnvironmentalOpen in IMG/M
3300020459Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)EnvironmentalOpen in IMG/M
3300020475Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300024180Seawater microbial communities from Monterey Bay, California, United States - 82DEnvironmentalOpen in IMG/M
3300024235Seawater microbial communities from Monterey Bay, California, United States - 79DEnvironmentalOpen in IMG/M
3300024243 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_150_MGEnvironmentalOpen in IMG/M
3300024250Seawater microbial communities from Monterey Bay, California, United States - 58D_rEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024293Seawater microbial communities from Monterey Bay, California, United States - 63DEnvironmentalOpen in IMG/M
3300024318Seawater microbial communities from Monterey Bay, California, United States - 46DEnvironmentalOpen in IMG/M
3300024319Seawater microbial communities from Monterey Bay, California, United States - 85DEnvironmentalOpen in IMG/M
3300024326Seawater microbial communities from Monterey Bay, California, United States - 64DEnvironmentalOpen in IMG/M
3300024328Seawater microbial communities from Monterey Bay, California, United States - 44DEnvironmentalOpen in IMG/M
3300024428Seawater microbial communities from Monterey Bay, California, United States - 32DEnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025594Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)EnvironmentalOpen in IMG/M
3300025623Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025637Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512 (SPAdes)EnvironmentalOpen in IMG/M
3300025640Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)EnvironmentalOpen in IMG/M
3300025676Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025685Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes)EnvironmentalOpen in IMG/M
3300025729Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_150m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025816Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)EnvironmentalOpen in IMG/M
3300025822Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)EnvironmentalOpen in IMG/M
3300025830Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)EnvironmentalOpen in IMG/M
3300025874Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300025897Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)EnvironmentalOpen in IMG/M
3300026443Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 4R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026466Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 70R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026500Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 54R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026504Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 46R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027672Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027833Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300028008Seawater microbial communities from Monterey Bay, California, United States - 1D_rEnvironmentalOpen in IMG/M
3300028126Seawater microbial communities from Monterey Bay, California, United States - 60DEnvironmentalOpen in IMG/M
3300028129Seawater microbial communities from Monterey Bay, California, United States - 42DEnvironmentalOpen in IMG/M
3300028131Seawater microbial communities from Monterey Bay, California, United States - 53DEnvironmentalOpen in IMG/M
3300028132Seawater microbial communities from Monterey Bay, California, United States - 61DEnvironmentalOpen in IMG/M
3300028189Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_135mEnvironmentalOpen in IMG/M
3300028282Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_77 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028284Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10EnvironmentalOpen in IMG/M
3300028287Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120mEnvironmentalOpen in IMG/M
3300028397Seawater microbial communities from Monterey Bay, California, United States - 50DEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GS313G0146KB_001530302189573028Marine EstuarineMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCNVN
DelMOSum2011_1004449753300000115MarineRMQENLNIIDKNVRVLEKIVDTAENNLIAAINSACNVKTN*
SI53jan11_10mDRAFT_10344833300000143MarineSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN*
SI34jun09_135mDRAFT_107624613300000226MarineVFIDKAYANEWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN*
BpDRAFT_1011060323300000930Freshwater And MarineRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN*
JGI20151J14362_1021609713300001346Pelagic MarineLFLNVSHIFVDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCNVN*
JGI20154J14316_1010455833300001348Pelagic MarineVKIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCKVN*
JGI20153J14318_1003571613300001351Pelagic MarineKIDRMQENLNIIDKNVRVLEKIINTAENNLTAEINNVCNVN*
JGI20155J14468_1015348313300001354Pelagic MarineLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN*
JGI20158J14315_1011449913300001355Pelagic MarineLFLNASNVFIDRAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN*
JGI26242J51144_104641123300003500MarineLFLNLSNVFIDKAYANEWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN*
JGI26273J51734_1020113213300003620MarineDRMQENLNIIDKNVRVLEKIIDTAENNLIVAINNACNVKTN*
Ga0066608_117388913300004273MarineNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLISAINSACNVKTK*
Ga0066610_1017856313300004276MarineDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN*
Ga0066611_1016215613300004277MarineAYANEWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIIDTAENNLIVAINNACNVKKN
Ga0105349_1002309413300008253Methane Seep MesocosmNLNIIDKNVRVLEKIIDTAENNLTAAIRNACKVKIN*
Ga0115566_1024363043300009071Pelagic MarineDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIIDITENNLIDAINNACNIKAN*
Ga0115566_1043718113300009071Pelagic MarineNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLTTEINNVCNVN*
Ga0115552_115836313300009077Pelagic MarineMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCNVN*
Ga0115561_132295623300009440Pelagic MarineWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCNVN*
Ga0115561_134997323300009440Pelagic MarineVVELNKSNVKIDRMQENLNIIDKNVRVIEKIVDTAENNLIVAINNACNVKTN*
Ga0115563_135275813300009442Pelagic MarineNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLMVAINNACHVKTN*
Ga0115558_140497513300009449Pelagic MarineNDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCKVN*
Ga0115565_1017337113300009467Pelagic MarineSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN*
Ga0115555_105018413300009476Pelagic MarineENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN*
Ga0115571_123168913300009495Pelagic MarineMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN*
Ga0115569_1008835853300009497Pelagic MarineIFVDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCKVN*
Ga0115568_1008577013300009498Pelagic MarineELNKSNVKIDRMQENLNIIDKNVRVLEKIIDTAENNLIVAINNACNVKTN*
Ga0115564_1007205313300009505Pelagic MarineRMQENLNIIDKNVRVLEKIIDTAENNLSVAINDACKRK*
Ga0115564_1013953513300009505Pelagic MarineENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN*
Ga0115564_1047753623300009505Pelagic MarineGLFLNVSHIFVDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLTTKINNVCNVN*
Ga0115567_1055331013300009508Pelagic MarineDRMQENLNIIDKNVRVLEKIINTAENNLTTEINNVCNVN*
Ga0115003_1048112933300009512MarineLFIDKAYANDWDLVVELNKSNVKIDRMQENLNIIDKNVRVIEKIINTAENNLTTTINNACNVKIN*
Ga0129331_128047713300012524AqueousYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDSAENNLIEAINKACNVKTN*
Ga0163111_1078107013300012954Surface SeawaterIDKAYANDWDLVVELNKSNVKIDRIQENLNIVDKNVRVIEKIIDKAKEDIINEINKKS*
Ga0180120_1033369213300017697Freshwater To Marine Saline GradientDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDSAENNLIVAINNACNVKIN
Ga0181431_109594213300017735SeawaterSNVKIDRMQENLNIIDKNVRVLEKIIDTAENNLTSAINNACNVKKIK
Ga0181380_107164213300017782SeawaterNLNIIDKNVRVLEKIIDTAENNLIVAINNACNVKTN
Ga0181560_1038738923300018413Salt MarshDKASANDWDVVVELNKSNVKIDRIQENLNIIDKNVRVIEKIIDNAEINIIDSINNACKK
Ga0181603_1022896823300020174Salt MarshGLIDKASANDWDVVVELNKSNVKIDRIQENLNIIDKNVRVIEKIIDNAEINIIDSINNACKK
Ga0206124_1002064513300020175SeawaterKNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0206124_1017556933300020175SeawaterFYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCKVN
Ga0206129_1006537463300020182SeawaterDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINDACNVKTN
Ga0206131_1023058413300020185SeawaterLFLNASNVFIDKAYANEWDVVVELNKSNVKIDRMQENLNIIDKNVRVIEKIVDTAENNLIVAINNACNVKTN
Ga0206131_1024779213300020185SeawaterLGLFLNVSHIFLDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCNVN
Ga0206131_1034343733300020185SeawaterVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0206130_1013267813300020187SeawaterNVSHIFVDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCKVN
Ga0181605_1003788073300020188Salt MarshKSNVKIDRIQENLNIIDKNVRVIEKIIDNAEINIIDSINNACKK
Ga0181605_1030076013300020188Salt MarshGLFLNVSNGLIDKASANDWDVVVELNKSNVKIDRIQENLNIIDKNVRVIEKIIDNAEINIIDSINNACKK
Ga0211689_102195063300020358MarineELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLTTTINNACNVKIN
Ga0211687_1013553313300020396MarineELNKSNVKIDRMQENLNIIDKNVRVLEKIIDTAENNLTVAINNACK
Ga0211514_1025854613300020459MarineLNASNIFIDKAHANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVIEKIIDEAKEDIIDEINKKS
Ga0211541_1029619513300020475MarineVFVDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIIDKAEDNLIASINSACRGKKN
Ga0213869_1036473123300021375SeawaterRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCKVN
Ga0213861_1057753823300021378SeawaterENLNIIDKNVRVLEKIINTAENNLTTEINNVCNVN
Ga0222716_1076989423300021959Estuarine WaterKVYANNWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIIDTAENNLTAAISNACKVKI
Ga0222715_1059065023300021960Estuarine WaterYANDWDVAVELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCKVN
(restricted) Ga0233433_1016484333300022931SeawaterNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN
Ga0228668_106455533300024180SeawaterQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0228665_113100123300024235SeawaterAYANEWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
(restricted) Ga0233436_102852313300024243SeawaterSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN
Ga0228677_112577213300024250SeawaterLNASNVVIDRAYANDWDVVVELNKSNVKIDRMQENLNIIDKKVRVLEKIVDTAENNLIVAINNACNVKTN
(restricted) Ga0233439_1026887913300024261SeawaterSHIFVDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCNVN
(restricted) Ga0233444_1041910523300024264SeawaterLNSSNAFIDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINKACNVKTN
Ga0228651_109435413300024293SeawaterENLNIIDKNVRVLEKIINTAENNLIAAINNACNVKTN
Ga0233400_112595823300024318SeawaterINVFIDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0228670_111918213300024319SeawaterDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0228652_113526323300024326SeawaterDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0228635_110356033300024328SeawaterNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0233396_114160023300024428SeawaterMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0209634_120903013300025138MarineVVELNKSNVKIDRMQENLNIVDKNVRVLEKIIDAAKKDIISEINKNN
Ga0209094_104078743300025594Pelagic MarineNIFIDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN
Ga0209041_114533613300025623MarineKIDRMQENLNIIDKNVRVLEKIIDTAENNLTASINSACKVKTN
Ga0209197_116199713300025637Pelagic MarineANKWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0209198_109120243300025640Pelagic MarineHIFVDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCNVN
Ga0209657_116869813300025676MarineNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLISAINSACNVKTN
Ga0209095_110726633300025685Pelagic MarineIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCKVN
Ga0209558_114099213300025729MarineQENLNIIDKNVRVLEKIIDTAENNLIVAINNACNVKTN
Ga0209193_110095333300025816Pelagic MarineIDRMQENLNIIDKNVRVLEKIINTAENNLKSEINNVCNVN
Ga0209714_107776613300025822Pelagic MarineFLNASNIFIDKAYANEWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN
Ga0209832_104921513300025830Pelagic MarineNEWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0209533_113989113300025874Pelagic MarineNLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0209631_1024106113300025890Pelagic MarineWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIINTAENNLTTEINNVCNVN
Ga0209425_1034716913300025897Pelagic MarineNVKIDRMQENLNIIDKNVRVLEKIINTAENNLTTEINNVCNVN
Ga0247559_113239123300026443SeawaterWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0247598_115046523300026466SeawaterLNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0247592_116121523300026500SeawaterVNDWDVVVELNKSNVKIDRLQENLNIIDKNVRVLEKIIDTAENNLTVAINNACKVKIN
Ga0247587_113817113300026504SeawaterENLNIIDKNVRVLEKIIDTAENNLTVAISNACKVKIN
Ga0209383_123213413300027672MarineNKSNVKIDRMQENLNIIDKNVRVLEKIIDTAENNLTTAINNACSVKMIK
Ga0209092_1003672433300027833MarineMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN
Ga0209092_1056702813300027833MarineVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN
Ga0209089_1061252623300027838MarineNLNIIDKNVRVLEKIINTAENNLTTTINNACNVKIN
Ga0228674_114436613300028008SeawaterVVVELNKSNVKIDRIQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0228648_111881823300028126SeawaterNASNAFIYKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINKACNVKTN
Ga0228634_109637433300028129SeawaterSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0228642_116315423300028131SeawaterIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKAN
Ga0228649_113593823300028132SeawaterAYANDWNVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDSAENNLIVAINNACNVKKI
Ga0257127_110486133300028189MarineVVELNKSNVKIDRMQENLNIIDKNVRVLEKIIDTAENNLIVAINNACNVKTN
Ga0256413_134796123300028282SeawaterHVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTI
Ga0257120_103026013300028284MarineNLNIIDKNVRVLEKIIDTAENNLTAAINNACNVKTN
Ga0257126_113129213300028287MarineVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIAAINNACNVKTN
Ga0228639_110463733300028397SeawaterNIFIDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0307488_1030966033300031519Sackhole BrineRMQENLNIIDKNVRVLEKIINTAENNLTTTINNACNVKIN
Ga0315320_1020980313300031851SeawaterKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN
Ga0315320_1101068623300031851SeawaterSNLFIDKAYANDWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIIDTAENNLIVAINNACNVKTN
Ga0315315_1012082173300032073SeawaterISKVYANNWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIIDTAENNLTVAISNACKVKIN


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