3300000036: Passalidae beetle gut microbial communities from Costa Rica - Gallery material (4MSU+4BSU+3MSU+3BSU)

Overview

Basic Information

• IMG/M Taxon OID: 3300000036
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0050939 | Gp0054011 | Ga0026037
• Sample Name: Passalidae beetle gut microbial communities from Costa Rica - Gallery material (4MSU+4BSU+3MSU+3BSU)
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 170323120
• Sequencing Scaffolds: 36
• Novel Protein Genes: 36
• Associated Families: 35

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
Not Available	16
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter → Mucilaginibacter ginsenosidivorans	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → unclassified Dechloromonas → Dechloromonas sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Passalidae Beetle Gut Microbial Communities From Costa Rica
• Type: Host-Associated
• Taxonomy: Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Passalidae Beetle Gut → Passalidae Beetle Gut Microbial Communities From Costa Rica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Quebrada Gonzales Sector, Braulio Carrillo National Park, Costa Rica
• Coordinates
  • Lat. (^o): 10.207151
  • Long. (^o): -84.007673
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001678	Metagenome / Metatranscriptome	653	Y
F001877	Metagenome / Metatranscriptome	623	Y
F005246	Metagenome / Metatranscriptome	407	Y
F007929	Metagenome / Metatranscriptome	342	Y
F008007	Metagenome / Metatranscriptome	341	Y
F010554	Metagenome / Metatranscriptome	302	Y
F013199	Metagenome / Metatranscriptome	273	Y
F014758	Metagenome / Metatranscriptome	260	Y
F019504	Metagenome / Metatranscriptome	229	Y
F019579	Metagenome / Metatranscriptome	229	N
F020041	Metagenome / Metatranscriptome	226	Y
F026254	Metagenome	198	Y
F031343	Metagenome	182	Y
F032915	Metagenome / Metatranscriptome	178	Y
F035396	Metagenome / Metatranscriptome	172	Y
F036529	Metagenome / Metatranscriptome	169	Y
F042138	Metagenome	158	Y
F042911	Metagenome / Metatranscriptome	157	Y
F044271	Metagenome	154	Y
F045186	Metagenome / Metatranscriptome	153	Y
F052427	Metagenome / Metatranscriptome	142	N
F053033	Metagenome / Metatranscriptome	141	Y
F056278	Metagenome	137	Y
F058609	Metagenome / Metatranscriptome	134	Y
F062378	Metagenome / Metatranscriptome	130	Y
F062961	Metagenome / Metatranscriptome	130	Y
F063194	Metagenome / Metatranscriptome	130	Y
F066402	Metagenome	126	Y
F072367	Metagenome / Metatranscriptome	121	Y
F083801	Metagenome	112	Y
F087111	Metagenome / Metatranscriptome	110	Y
F088569	Metagenome / Metatranscriptome	109	Y
F098791	Metagenome	103	Y
F101052	Metagenome / Metatranscriptome	102	Y
F105535	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
IMNBGM34_c000054	All Organisms → cellular organisms → Bacteria	32127
IMNBGM34_c000679	All Organisms → cellular organisms → Bacteria	8253
IMNBGM34_c001504	Not Available	3969
IMNBGM34_c002314	Not Available	2822
IMNBGM34_c004492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1886
IMNBGM34_c007373	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1417
IMNBGM34_c008368	Not Available	1319
IMNBGM34_c009134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1258
IMNBGM34_c012605	All Organisms → cellular organisms → Bacteria	1058
IMNBGM34_c012641	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1056
IMNBGM34_c012908	All Organisms → cellular organisms → Bacteria	1044
IMNBGM34_c013405	Not Available	1025
IMNBGM34_c014773	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter → Mucilaginibacter ginsenosidivorans	972
IMNBGM34_c015107	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	962
IMNBGM34_c015577	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	948
IMNBGM34_c015712	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	943
IMNBGM34_c017203	Not Available	902
IMNBGM34_c019429	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter → Mucilaginibacter ginsenosidivorans	850
IMNBGM34_c019900	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB	840
IMNBGM34_c021805	Not Available	802
IMNBGM34_c026576	Not Available	730
IMNBGM34_c026867	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	726
IMNBGM34_c037400	All Organisms → cellular organisms → Bacteria → Proteobacteria	625
IMNBGM34_c038665	Not Available	615
IMNBGM34_c038684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615
IMNBGM34_c039386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	610
IMNBGM34_c039528	Not Available	609
IMNBGM34_c042772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → unclassified Dechloromonas → Dechloromonas sp.	588
IMNBGM34_c043020	Not Available	587
IMNBGM34_c043421	Not Available	584
IMNBGM34_c048806	Not Available	555
IMNBGM34_c052294	Not Available	538
IMNBGM34_c053202	Not Available	534
IMNBGM34_c060196	Not Available	505
IMNBGM34_c061014	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	502
IMNBGM34_c061660	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
IMNBGM34_c000054	IMNBGM34_00005427	F083801	MPLIYADTSALFAYFHPQDEFSAAVDEAVKKYAPDFCYWPLLRFELRHNLRLANVDTDGAAAWNALRAAEKTTARLRWQGELSADRLIDAADELSAEIKPNCGSADILHVVAARRIKLLSSLDEFWTCDGKQAALAKKCGLAVRLFSLK*
IMNBGM34_c000679	IMNBGM34_0006796	F101052	MTTTKLISVKVPLKIFRALPDAHNGRSRFIVSALEEKISRQSAPEWKPTTARGRRMAALLEKGKAERYPLLNEEEFERELRERRGRFH*
IMNBGM34_c001504	IMNBGM34_0015041	F062378	MAASKPISLSTYIKTFSISLNNNFGTLTLVLGCFPFDIQPYHSMSDNSRFIFAIPSLHTHR*
IMNBGM34_c002314	IMNBGM34_0023147	F098791	MAFPKNANEMKAANYRFDDYATCRGCDDEIEWWITPTGKKIPMNPMPRGTSEAIAHWITCIESDLFRGKR*
IMNBGM34_c004492	IMNBGM34_0044921	F052427	MANSVVGLGLASPPVQLSNTVNAISQKFIVPVLGDNVFKPSPVFWALTREGKRFGAGELIFPEIYQEELPGGAYYGDQLLDTSVVDSVQPANQQWKPYRQPVVIPITDIILNRGGSNNLDIIRAKFQTASGSFLQKLSRALWHTSPQNTSLDVDDLNSWVVSTTNTIAGINRSLSANAWWLPATGVPGGSAALSSATAEPGYQSVTWGYDEPDLFVMNRTSYAAFKNQFVGNIRFGQGMQDDEALQVGFRNHFLFNNAVTVADYFATANQALLLNSKYIFPVFHEADYFNVDPFLKPSNQRVLVSCMYLTWNLSCISPRMNVAFTAIT*
IMNBGM34_c007373	IMNBGM34_0073732	F031343	MKFDSSALPLLPTQQELTELNDLLLSAMELYQTYATLERHPRVVGSTKSVELFTSCREQLHQDISLLDKQLEMLLTLSRSSVSGEGTRGDDTVMVGAAAGGGEGALMLIPDVEPTDMKSSVFEIMRKAFHTEDLFSDQLNASLRSAQGRKHLKLELQLKMIILSADQRCKLLEDRYGYARTKNLLFQGLRRQTTRFLSALSGEKRTDIDR*
IMNBGM34_c008368	IMNBGM34_0083681	F042911	MISKAFKFAVLSGSVLLCLGLPAVAQNVVTVDFTGGYSTTFEDYGAGVYTATINGTSSASGIICDDFNDEVYANETWKANAYQASSLNSSNIDETMFGAKIGITGYAEVATLVSMMFGNVTTFGGITGINQSEIASAIWDITTTPNGISGLDSKAQALVAAIKNEFGSVSAAQAYLSGLKNLWILTPSTLGPGEPQEMWTAGLSVPEGGAALMYLSLAGI
IMNBGM34_c009134	IMNBGM34_0091343	F010554	AGSFVATVAGVLCLSYTAYGWAAFFLXVGALNLADGCWYMAIARSAPPRA*
IMNBGM34_c012605	IMNBGM34_0126052	F044271	MSAPAPIPREEFEHFLVALTHEIRNRLNGIALEAADIAELAGPPADATRLQEYVQECSAFLKKVRETWAPDDAHVAREKLAVTAKELRELKI*
IMNBGM34_c012641	IMNBGM34_0126412	F035396	MSVAEIIHEIEALPSNERLRLVEKLVQLTDADIPESLRQSMAEAERGELIELDDVLQDLDRP*
IMNBGM34_c012908	IMNBGM34_0129084	F105535	ANSWYSNQLNKRALRASDGLPLQQAHALELFKNEGLAPDAALRVEKFFNRGST*
IMNBGM34_c013405	IMNBGM34_0134052	F019579	MTLQSVLSSESEVETLRQAAAPEVAQFVINLSSSTTPMALEQPQDPQLRDYKFFVSRRREDGRERFRL
IMNBGM34_c014773	IMNBGM34_0147731	F088569	MPKPGDIYKEYRELVLKKSKEEINGQKFSFVFTSEKEGTFTLTNNETRDMIGGSFKLSVNNDGLNILMDYKGFYITQTLKIDKKESTIVREPNSGKVFLTGHKLDVNSK*
IMNBGM34_c015107	IMNBGM34_0151072	F026254	MKTVIQFSREEEVKALPILLRRSSGMILPERTYVLGEDIVGLLRNAGIQFIQLSREALTPCLEELAGERV*
IMNBGM34_c015577	IMNBGM34_0155772	F053033	MNRRFPLFAIALFSLTLVLAHATPLAPNQTFKLSSGRLAKILSISKIEYSKGVMALLVRYQTTLSVDEHKALSQEVDEVWHLVQKEADHAGYGDAIISSNETPKGVFITANHVLNFIYEKGTDGKWTRLNRADFMAME*
IMNBGM34_c015712	IMNBGM34_0157122	F072367	MRTKVPPFILRVSFLAALIGAFLGVLIGFNNGDELGWSLMRGAVMFLAFGTIARWWLGSMAKAWLESRLESLQEKTKLQKPAPSRA*
IMNBGM34_c017203	IMNBGM34_0172033	F042138	MKNPLLNNWPAKLVSFAIALVIWAYVKNLVDPSFFDRLFTGTLSAGK*
IMNBGM34_c019429	IMNBGM34_0194292	F088569	MPKPEDIYKEYRELVLKKAQDEINGQKFSFMFTSEKEGTFTVTNNETKDMIGGTFKLSVNNDGLNILMDYKGFYITQTLKIDKKESTIVREPNSGKVFLTGHKLDVNGK*
IMNBGM34_c019900	IMNBGM34_0199002	F056278	MRVFEVLMRSGTKSEITAEVMLDDPSVDQKIYFYRDKGLKQLVAFFLRDEVAGIVFGPDTGTTVPRYK*
IMNBGM34_c021805	IMNBGM34_0218053	F032915	MSTMHCSLLSLGCIFGFTTPNQHAGLTALRALKIAQRRLRPEVRAKLLGLSSSRTDGSLTPDAWRFVFLDPATSGNCRVVTVAAKTSSEHPDTVEAFASMKNENVAGTHAVAQNKWTVDSDKALDSVRHSSKLKGVTSAEFRLVQPRSGQEAQWTILFFAEGPDAIARFQIGAKTGTVKTLNGNS*
IMNBGM34_c026576	IMNBGM34_0265762	F001877	MLGPSRPVPREGTRARVAHFGGDYESATVLAVSEQGRRLSVLCESGETLDFVLHPATARFVASGLGQGPRLELLG*
IMNBGM34_c026867	IMNBGM34_0268671	F013199	GKKAASRGPADQLPDPNAQTQYLQYDTEKKRLRYADSIQKDELLDHDGDVAVSIALAQFRPGAGETNLKASQLRVDTTQVHPFVDIITPLAWSAIASIAPDKMGQISLDALGFKSPQAMEGTSKILLTRGTGKLAVNVSRAQAQSTFMKALNIMIQAAKIAAPVVSLPAISVPALSTFTEMMSYWEDRTRFVMAGNLTTAVATQQALNDPDRAPAYIGLTSGDYLMVPQKHVDELAKSLPNL
IMNBGM34_c037400	IMNBGM34_0374001	F014758	MKKPSKEKEAVLNVFAALIRPLMRVAFEYGISASEIAGTVRRTYVQALEAKLVEQNRPPTDARLAAVAGLPK
IMNBGM34_c038665	IMNBGM34_0386652	F045186	MDKGKMSGGGKFMDNAKGMCSTKDNPMSAASRIAPMCGPGMNADQTKANKLLQKAHAEKDSLRGKSGM*
IMNBGM34_c038684	IMNBGM34_0386841	F062961	FSTDGFYEIPIGNSTFDIPAVDDLRGGMSGFPDKASVEKLRYYGIKTVVLHLKMPKLPGIVGYALAEPPNAAAAAAKPIAGLGITKRQVGDIVIYEIGPGPAALHGTDG*
IMNBGM34_c039386	IMNBGM34_0393862	F087111	MNKIVIASLGAVLVTTVAFAYEVHHPNLRDAYGSAEGAIHALQMAQNDNRHLEFGGHAKAAIGHLRMAEQEIIEADRWNDAHHGRR
IMNBGM34_c039528	IMNBGM34_0395281	F007929	MAAVGMSFAGLSVLTMILGQMLGGQMNKFDGFVARSWVQLGFMITLGSIVPPLLALFEASTPVVWRISSGLMAIILGSWALTFPRRRHAAKSTPLPMQVVIFCVAMDLVALALALNAILVPVQRLPGVYAASVTAILIGAAMLFLFAFVHWYEALLGHEKPES*
IMNBGM34_c042772	IMNBGM34_0427721	F005246	AMEYFLAGRRVIVAKFVAHRHKEVQNKAKKVVGIVNLYEVQCADGKAPTVQTWCPRNVQTVEQAAAECSCVFKDGQRLVVEFDSMEPNHFDAKNGVIIRAVSVLPLE*
IMNBGM34_c043020	IMNBGM34_0430202	F058609	MPAGIALEELLLWNEQSANYWKSHLDANPNLLELPCGIGGANTVQDLVRHIWGAELRWCERL
IMNBGM34_c043421	IMNBGM34_0434212	F036529	PFPFYFFLAQEIPQPNPEALSTWLVDAAALAAILLVFLKVLDHFKRRPSLEQELEKLLRQLRTELNQLRGEQAEHLAEVRLRVEGAHQRVDHLTHDLNNKLQRLPGEIVDILHKTGVLKGH*
IMNBGM34_c048806	IMNBGM34_0488061	F001678	MRLFSIWVIEFLKLVGRQRLHPVATQCPICHQMVRLHVNKAGRRHVFGHARGLYEGSRFGEHYTAEMRCVGSGAPTAFNPRPNEDQRFKLPAVLLDD*
IMNBGM34_c052294	IMNBGM34_0522942	F063194	TTQYTALNTLLSSLQTTSAYLTQAFSSLPKVQNSSS*
IMNBGM34_c053202	IMNBGM34_0532021	F066402	MLKLSAATLLVLILVGCSGTNGLTXGTPDDASDNGSYSGYTLNSPVTDQNPHPGGDPSYPASVSDQGVTPPPPLKTDGR*
IMNBGM34_c060196	IMNBGM34_0601961	F019504	MEKSLRCTVCTWRGSWAEAAAVRVQPKPLEHSLQEIQQQYEEKQAEEEKLGGHKLPHCPVCGHHTLPVKLHRSAAL*
IMNBGM34_c061014	IMNBGM34_0610141	F020041	MRSILKCTSTLLLAAAISAPALMTGCAARVRVYDPYYHDYHNWNGETVYYNQWERDTHRDHVDYNKRNAADQKAYWDWRHSQH*
IMNBGM34_c061660	IMNBGM34_0616601	F008007	RVIIELKPEQQEILDRAAQSGMSPEELLDQAFAVIHEQQRNGEWMLAEREAVATHIAGGFAQAERGELIDAEEARRILRERRAKRLIA*