Metagenome / Metatranscriptome Family F087111

Basic Information
Family ID	F087111
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	84 residues
Representative Sequence	MNKIVIASLSAVLVTTIAVGYEIHHPNLRDAYGATENAIHHIQEAQANNKGLEFGGHAEKAIDALRHAQQELVEGDKWNDAHHK
Number of Associated Samples	84
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.65 %
% of genes near scaffold ends (potentially truncated)	24.55 %
% of genes from short scaffolds (< 2000 bps)	67.27 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (59.091 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.000 % of family members)
Environment Ontology (ENVO)	Unclassified (27.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.091 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118. 1IMNBGM34_0393862 2JGI12270J11330_102592101 3JGI12269J14319_102519681 4JGI12635J15846_1000088910 5JGIcombinedJ26739_1016692111 6Ga0062385_100577003 7Ga0062385_101224612 8Ga0062389_1032989611 9Ga0070731_100153163 10Ga0070733_102669523 11Ga0070733_105622372 12Ga0070762_110532602 13Ga0070764_104823312 14Ga0075017_1013109801 15Ga0075019_100654621 16Ga0075522_103030312 17Ga0116222_15594401 18Ga0116133_10816162 19Ga0116129_10013237 20Ga0116129_10065509 21Ga0116129_10400092 22Ga0116129_12434942 23Ga0116217_104801312 24Ga0134128_100014589 25Ga0136449_1020568031 26Ga0134126_115545241 27Ga0134126_116897491 28Ga0181530_101223091 29Ga0181532_107174991 30Ga0181523_101292612 31Ga0181528_100150833 32Ga0181528_101163473 33Ga0182013_1000051028 34Ga0182016_105448651 35Ga0182015_100793084 36Ga0182024_105723921 37Ga0182030_102064192 38Ga0167644_100026544 39Ga0187824_102167292 40Ga0187847_101778573 41Ga0187783_102577613 42Ga0187855_102661252 43Ga0187890_100535732 44Ga0187890_104082332 45Ga0181508_13627022 46Ga0210395_103344062 47Ga0210395_104686452 48Ga0210408_113390012 49Ga0210397_103087801 50Ga0210383_100100433 51Ga0210390_101950512 52Ga0210390_103719662 53Ga0210390_111541642 54Ga0210398_100023704 55Ga0208193_100143613 56Ga0208193_10117852 57Ga0208193_10179632 58Ga0208193_10395552 59Ga0208589_10064182 60Ga0209483_13622962 61Ga0179587_100915842 62Ga0209008_10123061 63Ga0209222_10924611 64Ga0209525_11347611 65Ga0209221_10403102 66Ga0209333_10307901 67Ga0209139_103063101 68Ga0209517_100245633 69Ga0209579_100060226 70Ga0209624_102952862 71Ga0209006_101797312 72Ga0265354_100030112 73Ga0265357_10054492 74Ga0302156_100160405 75Ga0302278_104213511 76Ga0311362_104665482 77Ga0311359_111062432 78Ga0311363_107021161 79Ga0311328_110849301 80Ga0311331_107807582 81Ga0311342_113394171 82Ga0311370_121235091 83Ga0210252_106586241 84Ga0138298_17077242 85Ga0170823_104258103 86Ga0170823_171010971 87Ga0302307_106952661 88Ga0302187_100043368 89Ga0170818_1120202502 90Ga0310686_1005970511 91Ga0310686_1016256792 92Ga0310686_1029775973 93Ga0310686_1057775201 94Ga0310686_1093823407 95Ga0310686_1127526042 96Ga0307476_100333413 97Ga0307476_101516502 98Ga0307474_100020726 99Ga0307478_101170293 100Ga0307478_104065493 101Ga0311301_1000331950 102Ga0311301_115693842 103Ga0348332_126239182 104Ga0348332_142863752 105Ga0335074_1000036448 106Ga0335074_1000125620 107Ga0335074_102205972 108Ga0335075_102906702 109Ga0370494_024574_282_533 110Ga0370492_0247823_99_353
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118. 1IMNBGM34_0393862 2JGI12270J11330_102592101 3JGI12635J15846_1000088910 4JGIcombinedJ26739_1016692111 5Ga0062385_100577003 6Ga0062385_101224612 7Ga0062389_1032989611 8Ga0070731_100153163 9Ga0070733_105622372 10Ga0070762_110532602 11Ga0075017_1013109801 12Ga0075019_100654621 13Ga0116222_15594401 14Ga0116133_10816162 15Ga0116217_104801312 16Ga0134128_100014589 17Ga0181530_101223091 18Ga0182015_100793084 19Ga0182030_102064192 20Ga0187824_102167292 21Ga0187847_101778573 22Ga0187855_102661252 23Ga0210408_113390012 24Ga0209008_10123061 25Ga0302156_100160405 26Ga0311328_110849301 27Ga0311342_113394171 28Ga0210252_106586241 29Ga0310686_1127526042 30Ga0335074_1000036448 31Ga0335075_102906702 32Ga0370494_024574_282_533
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84 1Ga0310686_1029775973 2IMNBGM34_0393862 3JGI12635J15846_1000088910 4Ga0062385_101224612 5Ga0062389_1032989611 6Ga0070733_105622372 7Ga0075017_1013109801 8Ga0075019_100654621 9Ga0116133_10816162 10Ga0134126_115545241 11Ga0181523_101292612 12Ga0182015_100793084 13Ga0182030_102064192 14Ga0187824_102167292 15Ga0187847_101778573 16Ga0187783_102577613 17Ga0187855_102661252 18Ga0210395_103344062 19Ga0210395_104686452 20Ga0210390_103719662 21Ga0208193_100143613 22Ga0208193_10117852 23Ga0208193_10179632 24Ga0208589_10064182 25Ga0179587_100915842 26Ga0209221_10403102 27Ga0209333_10307901 28Ga0209517_100245633 29Ga0209579_100060226 30Ga0302156_100160405 31Ga0311328_110849301 32Ga0311331_107807582 33Ga0210252_106586241 34Ga0138298_17077242 35Ga0170823_104258103 36Ga0310686_1005970511 37Ga0311301_1000331950 38Ga0335074_1000036448 39Ga0335074_1000125620 40Ga0335074_102205972 41Ga0335075_102906702 42Ga0370494_024574_282_533
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00781	DAGK_cat	4.55
PF03965	Penicillinase_R	2.73
PF08530	PepX_C	2.73
PF08897	DUF1841	1.82
PF05569	Peptidase_M56	1.82
PF02518	HATPase_c	1.82
PF00664	ABC_membrane	1.82
PF00005	ABC_tran	1.82
PF04542	Sigma70_r2	1.82
PF13091	PLDc_2	1.82

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	9.09
COG3682	Transcriptional regulator, CopY/TcrY family	Transcription [K]	2.73
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	2.73
COG2936	Predicted acyl esterase	General function prediction only [R]	2.73
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.82
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.82
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.82
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.82
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.82
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.09 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.91 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.82 %
Unclassified	root	N/A	40.00 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.64 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	10.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.64 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.91 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.64 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.91 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.91 %
Unclassified	root	N/A	40.00 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.64 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.91 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.91 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.91 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.91 %
Dyella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella	0.91 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.91 %
Unclassified	root	N/A	40.00 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.91 %

Name	Rank	Taxonomy	Distribution
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.91 %
Dyella kyungheensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → Dyella kyungheensis	0.91 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Steroidobacter soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter soli	0.91 %
Unclassified	root	N/A	40.00 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.91 %

Name	Rank	Taxonomy	Distribution
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.91 %
Dyella kyungheensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → Dyella kyungheensis	0.91 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Steroidobacter soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter soli	0.91 %
Unclassified	root	N/A	40.00 %
Variovorax sp. URHB0020	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. URHB0020	0.91 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000036\|IMNBGM34_c039386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	610	Open in IMG/M
3300000567\|JGI12270J11330_10259210	Not Available	556	Open in IMG/M
3300001356\|JGI12269J14319_10251968	Not Available	658	Open in IMG/M
3300001593\|JGI12635J15846_10000889	All Organisms → cellular organisms → Bacteria	26072	Open in IMG/M
3300002245\|JGIcombinedJ26739_101669211	Not Available	536	Open in IMG/M
3300004080\|Ga0062385_10057700	All Organisms → cellular organisms → Bacteria → Proteobacteria	1712	Open in IMG/M
3300004080\|Ga0062385_10122461	All Organisms → cellular organisms → Bacteria → Proteobacteria	1299	Open in IMG/M
3300004092\|Ga0062389_103298961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. URHB0020	605	Open in IMG/M
3300005538\|Ga0070731_10015316	All Organisms → cellular organisms → Bacteria → Proteobacteria	5446	Open in IMG/M
3300005541\|Ga0070733_10266952	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1127	Open in IMG/M

Showing 1 to 10 of 109 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.27%
Host-Associated	Host-Associated	2.73%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	23.64%
Arthropoda	Host-Associated → Arthropoda	0.91%
Plants	Host-Associated → Plants	1.82%
Terrestrial	Environmental → Terrestrial	73.64%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Arthropoda → Digestive System	0.91%
Freshwater	Environmental → Aquatic → Freshwater	21.82%
Peat	Environmental → Terrestrial → Peat	10.00%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.82%
Sediment	Environmental → Aquatic → Sediment	1.82%
Soil	Environmental → Terrestrial → Soil	61.82%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	10.00%
Midgut	Host-Associated → Arthropoda → Digestive System → Midgut	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	21.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.91%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.00%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.55%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.73%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.00%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.18%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Unclassified	Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.73%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	7.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.55%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.73%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.64%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.73%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.55%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.82%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.91%
Passalidae Beetle Gut	Host-Associated → Arthropoda → Digestive System → Midgut → Unclassified → Passalidae Beetle Gut	0.91%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	8.18%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.55%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.27%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.91%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.64%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.73%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.82%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000036	Passalidae beetle gut microbial communities from Costa Rica - Gallery material (4MSU+4BSU+3MSU+3BSU)	Host-Associated	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M

Showing 1 to 10 of 84 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
IMNBGM34_0393862	3300000036	Passalidae Beetle Gut	MNKIVIASLGAVLVTTVAFAYEVHHPNLRDAYGSAEGAIHALQMAQNDNRHLEFGGHAKAAIGHLRMAEQEIIEADRWNDAHHGRR
JGI12270J11330_102592101	3300000567	Peatlands Soil	MKKTAIVLASVLLATVAVSYEIHHPNLKDAYDAAEKGIEHVKHAQEHNKGIEFGGHAEKAIEAFKHAQQELIEGDKYNDMHQKK*
JGI12269J14319_102519681	3300001356	Peatlands Soil	MKKTAIVAISVLLATAAIAYEIHHPNLKDAYGAIENAIKHIHEAQAANKGIEFGGHADGALDALKHAQQELIEGDKYNDMHQKK*
JGI12635J15846_1000088910	3300001593	Forest Soil	MKRIVIASLSATLVTTIALAYEIHHPNLRDADRDAQNAINHIINAQKGNQGIEFGGHAEKAIDLLKHAQEEIVEGDKYNDAHHR*
JGIcombinedJ26739_1016692111	3300002245	Forest Soil	MQKIVIASLAVLATTTVALAYEIHHPNLRDAYAATENAIHHIKDAQAANKGIEFGGHGDKALEALQHAEQELIEGDKYNDAHHR*
Ga0062385_100577003	3300004080	Bog Forest Soil	MNKIVIASLSAVLVATIAVGYEIHHPNLRDAYGATENAIHHVQEAQANNKGLEFGGHAEKAIDALRHAQQELVEGDKWNDAHHK*
Ga0062385_101224612	3300004080	Bog Forest Soil	MKMNAIAALSVLLATAAIAYQIHHPNLASAYESADAAIKHVQDAQAANKGIEFGGHADRAIEAFRQAQQELIEADKYNDAHQKK*
Ga0062389_1032989611	3300004092	Bog Forest Soil	MKKTVIASLSALFVVTMAVAYEIHHPNLRDGYAAADNAIHHIQAAQANNKGVEFGGHATKAIDALRLAQQEMIAGDQWNEARHK*
Ga0070731_100153163	3300005538	Surface Soil	MKAFLIGSLSILVATAVYAYEIHHPNLRDAYAAAEQGIHHIQEAQAANKGLEFGGHAEKALDHFKQAQAELVEGDKWNDAHHHR*
Ga0070733_102669523	3300005541	Surface Soil	MKKIVIASLSAVLVTTIAVAYEIHHPNLRDAFGATENAIHHIQAAQANNKGLEFGGHAEKAIEALRHAQQELVEGDKWNDAHHR*
Ga0070733_105622372	3300005541	Surface Soil	MKKLVIASLGTVLVTTVALAYEVHHPNLRDAYGATEMAMQHIHEAQAANGRVEFGGHARRALADLQAAEREIMAADRWNDAHHHR*
Ga0070762_110532602	3300005602	Soil	TKSIQPQGEIMKKIVIASLAFLVTTMALAYEIHHPNLRDAYGATENAIHHVQEAQAANKGIEFGGHAEKALEALRHAQQEIMAADQWNDAHHR*
Ga0070764_104823312	3300005712	Soil	MNKVAIASLSAVLVATIAVGYEIHHPNLRDAYGAADAAIHHIQEAQAANKGVEFGGHGDKAIDALRHAQQELIEGDKWNDAHHR*
Ga0075017_1013109801	3300006059	Watersheds	MKKIVIASLSAILVTTIAVALEIHHQNLRDAYGAADTAIHHIEAAQAINKGIEFGGHAEKAIEHLRSAKQELIEGDHYNDSHHK*
Ga0075019_100654621	3300006086	Watersheds	VAIAYEIKHPNLRDAMGACENAIKHIKTAQANNKGVEFGGHAEKAIDLLKQAQAEIAEGDKFNETHHAH*
Ga0075522_103030312	3300006638	Arctic Peat Soil	MKKIVIASLSAVLVTTIALGYEIHHPNLRDAYGAADNAIHHIQEAQAANKGVEFGGHAEKAIEALRHAQQELIEGDKWNDAHRK*
Ga0116222_15594401	3300009521	Peatlands Soil	PPQRKTMKKTAIVAISVLLATAAIAYEIHHPNLRDAYGATENAIKHIQEAQAKNKGIEFGGHAEKAIDHLRMAQQELIEGDKYNDMHHK*
Ga0116133_10816162	3300009623	Peatland	MRKIMKKIVIASLSAALVTTVAMAYEIHHPNLRDAHHDAGMGINHIQNAQQANKGVEFGGHAEKAINLLRQAQAEIVEADKWNDAHHH*
Ga0116129_10013237	3300009633	Peatland	MKKIVIASLAVLVATMALAYEIHHPNLRDAYGATENAIHHIQEAQAASKGIEFGGHAEKALAALQHAEQEIIAGDQWNDAHHK*
Ga0116129_10065509	3300009633	Peatland	MQKIVIASLAVLVTTVALAYEIHHPNLRDAYAATENAIHHIKDAQAANKGIEFGGHGDKALEALEHAQQELIEGDKYNDAHHR*
Ga0116129_10400092	3300009633	Peatland	LINPNKGEIMKKIVIASLAVLVTTMALAYEIHHPNMRDAYGATENAIHHIQEAQAANKGIEFGGHGDKALAALQHAEQEIIAADQWNDAHHR*
Ga0116129_12434942	3300009633	Peatland	LAVLVTTMALAYEVHHPNLRDAYGATETAIHHIKEAQAANKGVEFGGHGDKALEALQHAEQEIIAGDQWNDAHHK*
Ga0116217_104801312	3300009700	Peatlands Soil	SVLLATAAIAYEIHHPNLKDAYGAIENAIKHIHEAQAANKGIEFGGHADGALDALKHAQQELIEGDKYNDMHQKK*
Ga0134128_100014589	3300010373	Terrestrial Soil	MLFAGCDMAFILQGEIMKKIVIASLGAVFVTTAALAYEIHHPNLRDAYGATESAIHRIQEAQAANRGIRFGGHADQAIDALRKAEQQIDAADRWNDAHARHK*
Ga0136449_1020568031	3300010379	Peatlands Soil	MRKTAIAAFAVLLATAAIAYEIHHPNLRDAYGATENAIKHIQEAQAKNKGIEFGGHAEKAIDHLRMAQQELIEGDKYNDMHHK*
Ga0134126_115545241	3300010396	Terrestrial Soil	AGCDMAFILQGEIMKKIVIASLGAVFATTAALAYEIHHPNLRDAYGATDSAIHRIQEAQAANRAIRFGGHADQAIDDLRRAEQQLDAADRWNDAHAHRK*
Ga0134126_116897491	3300010396	Terrestrial Soil	MAFILQGEIMKKIIIASLGAVFVTTAALAYEIHHPNLRDAYGATESAIHRIQEAQAANRGIRFGGHADQAIDALRKAEQQIDAADRWNDAHHK*
Ga0181530_101223091	3300014159	Bog	HPNLRDAYAAAENAIKHVQEVQAANKGIEFGGHAEKALHALKNAQRELIEGDKYNGMHQKK*
Ga0181532_107174991	3300014164	Bog	LATAAIAYEIHHPNLRDAYGASENAIKHIQEAQAKNKGIEFGGHAEKAIDHLRMAQQELIEGDKYNDMHHK*
Ga0181523_101292612	3300014165	Bog	MIDIFYTANSGSITINPPQGKTMKKTAIAALAVLLATAAIAYEIHHPNLRDAYGASENAIKHIQEAQAKNKGIEFGGHAEKAIDHLRMAQQELIEGDKYNDMHHK*
Ga0181528_100150833	3300014167	Bog	MKKIVIAALSAVLVTTVAMAYEIHHPNLRDAHHDAEMGINHIQNAQQANRGVEFGGHAEKAIDLLRQAQAEIVEADKWNDAHHH*
Ga0181528_101163473	3300014167	Bog	MKKIVIASLSAVLVTTVAMAYEIHHPNLRDAHHDAEMGINHIQNAQQANKGVEFGGHAEKAIDLLRQAQAEIVEADKWNDAHHH*
Ga0182013_1000051028	3300014492	Bog	MKKIVIASLSAVLVTTVAMAYEIHHPNLRDAHHDAEMGINHIQNAQQANKGVEFGGHAEKAINLLRQAQAEIVEADKWNDAHHH*
Ga0182016_105448651	3300014493	Bog	MKKIVIASLSAVLVTTVAMAYEIHHPNLRDAHHDAGMGINHIQSAQQANKGVEFGGHAEKAIDLLRQAQAEIVEADKWN
Ga0182015_100793084	3300014495	Palsa	MPVPCRFIHRKGKIMKKTAIVLVSALIATAAVSYEIHHPNLRDAFGDSENAIKHVQMAQAANKGIEFGGHAEKAIEHFRMAQQELVEGDKFNDSHHH*
Ga0182024_105723921	3300014501	Permafrost	MNKIVIASLSAVLVTTIAVGYEIHHPNLRDAFGATENAIHHVQAAQANNKGLEFGGHAEKAIDALRHAQQELVEGDKWNDSHHK*
Ga0182030_102064192	3300014838	Bog	MKKIVIAALSVVLTSIALGYEIHHPNLKSAYADAENAIQHIHAAQAANKGVEFGGHADLALEALKHVEQELIEGDKYNDAHHK*
Ga0167644_100026544	3300015206	Glacier Forefield Soil	MKKIVIASLAVLVTTMALAYEIHHPNLRDAYGATENAIHHIQEAQAASKGIEFGGHAEKALAALQHAEQEIIAGDQWNDAHHK*
Ga0187824_102167292	3300017927	Freshwater Sediment	MKRIAIASLSAAFVTAVALAYDIHHPNLRDAHRAAEMAIHHIETAQRDNRRVEFGGHAKRAIELLRRAQQELVEADQWNDAHHH
Ga0187847_101778573	3300017948	Peatland	MKKTNIALFSALIATAAFGFEFHHPNLRDANKAAETAIAHIQEAQAANKGVEFGGHAEKAIELLKQTQQELMEAEKYVDMHAKR
Ga0187783_102577613	3300017970	Tropical Peatland	MKKIVLASLAAILVTTIAMAYEIHHPNLRDAYGAAGDAIQHIQKAQALNKGVEFGGHAEKAIDALKHAQQELIEGDKWNDAHHK
Ga0187855_102661252	3300018038	Peatland	MKKTAIASLSVLLATAALSYEFHHPNLKDAHQAAEMAIKHVQEAQAANKGIEFGGHAEKAIELLKHAQQELVEGDK
Ga0187890_100535732	3300018044	Peatland	MKKIVIASLSAVLVTTVAMAYEIHHPNLRDAHHDAEMGINHIQNAQQANKGVEFGGHAEKAIDLLRQAQAEIVEADKWNDAHHH
Ga0187890_104082332	3300018044	Peatland	MKKIVIASLSAALVTTVAMAYEIHHPNLRDAHHDAEMGINHVQNAQQGNKGVEFGGHAEKAIDLLRQAQAEIVEADKW
Ga0181508_13627022	3300019256	Peatland	MKKIVIAALSAVLVTTVAMAYEIHHPNLRDAHHDAEMGINHIQNAQQANRGVEFGGHAEKAIDLLRQAQAEIVEADKWNDAHHH
Ga0210395_103344062	3300020582	Soil	MKKIVIASLAVLVTTMALAYEIHHPNLRDAYGATENAIHHVQEAQAANKGIEFGGHAEKALEALRHAQQEIMAADQWNDAHHR
Ga0210395_104686452	3300020582	Soil	MKKLVIASLAAALVTTVAVAYEIHHPNLRDAFGATENAIHHVQAAQANNKGLEFGGHAEKAIDALRHAQQELVEADKWNDAHHR
Ga0210408_113390012	3300021178	Soil	VAVAYEIHHPNLRDAFGATENAIHHVQAAQANNKGLEFGGHAEKAIDALRHAQQELVEADKWNDAHHR
Ga0210397_103087801	3300021403	Soil	MKKLVIASLAAVLVTTVALAYEIHHPNLRDALGAAENAIHHVQAAQANNKGLEFGGHAEKAIDALKHAQQELIEADRWNDAHHH
Ga0210383_100100433	3300021407	Soil	MKKLVIASLAAVLITTVAVAYEIHHPNLRDAFGATENAIHHIQAAQANNKGLEFGGHAEKAIDALRHAQQELVEADKWNDAHHR
Ga0210390_101950512	3300021474	Soil	MNKIVIASLSAVLVATIAVGYEIHHPNLRDAYGATENAIHHVQAAQANNKGLEFGGHAEKAIDALRHAQQELVEGDKWNDAHHR
Ga0210390_103719662	3300021474	Soil	MKKIVIGSLGAILVTTAAFAYEVHHPNLRDAYGATEMAIQHIHEAQSANGRVEFGGHARRAIADLQAAEQELVAADKWNDAHHHR
Ga0210390_111541642	3300021474	Soil	MNKIVIASLSAVLVTTIAVGYEIHHPNLRDAYGAAENAIHHVQEAQANNKGLEFGGHAEKAIDALRHAQQELVEGDKWNDAHHH
Ga0210398_100023704	3300021477	Soil	MNKTVIASLSAVLVTTIAVGYEIHHPNLRDAYGATENAIHHIQEAQANNKGLEFGGHAEKAIDALRHAQQELVEGDKWNDAHHK
Ga0208193_100143613	3300025463	Peatland	MQKIVIASLAVLVTTVALAYEIHHPNLRDAYAATENAIHHIKDAQAANKGIEFGGHGDKALEALEHAQQELIEGDKYNDAHHR
Ga0208193_10117852	3300025463	Peatland	MKKIVIASMAVLVATLALAYEVHHPNLRDAYGATENAIHHIKEAQAANKGLEFGGHGDKALEALQHAEQEIIAADQWNDAHHR
Ga0208193_10179632	3300025463	Peatland	MKKIVIASLAVLVATMALAYEIHHPNLRDAYGATENAIHHIQEAQAASKGIEFGGHAEKALAALQHAEQEIIAGDQWNDAHHK
Ga0208193_10395552	3300025463	Peatland	MKKIVIASLAVLVTTMALAYEIHHPNMRDAYGATENAIHHIQEAQAANKGIEFGGHGDKALAALQHAEQEIIAADQWNDAHHR
Ga0208589_10064182	3300025634	Arctic Peat Soil	MKKIVIASLSAVLVTTIALGHEIHHPNLRDAYGAADNAIHHIQEAQAANKGVEFGGHAEKAIEALRHAQQELIEGDKWNDAHHK
Ga0209483_13622962	3300025862	Arctic Peat Soil	MKKIVIASLSAVLVTTIALGYEIHHPNLRDAYGAADNAIHHIQEAQAANKGVEFGGHAEKAIEALRHAQQELIEGDKWNDAHRK
Ga0179587_100915842	3300026557	Vadose Zone Soil	MKKTAIAVLSVLLVTAAIAYEIHHPNLRAAYAAAENAIKHVQEAQAANKGIEFGGHADKALDALKLAQQELIEGDKYNDTHQKK
Ga0209008_10123061	3300027545	Forest Soil	MKKIVIASLAILATTMALAYEVHHPNLRDAYGATENAIHHIKEAQSKNQGVEFGGHGDKALEALQHAEQ
Ga0209222_10924611	3300027559	Forest Soil	MKRIVIASLSATLVTTIALAYEIHHPNLRDADRDAQNAINHIINAQKGNQGIEFGGHAEKAIDLLKHAQEEIVEGDKYNDAHHR
Ga0209525_11347611	3300027575	Forest Soil	MKKIVIASLAILVATMALAYEVHHPNLRDAYGATENAIHHIQKAQAANQGVEFGGHGDKALEALQHAEQEIIEGDKWNDAHHR
Ga0209221_10403102	3300027609	Forest Soil	MKKIVIASLAILVATMALAYEVHHPNLRDAYGATENAIHHIKEAQSKNQGVEFGGHGDKALEALQHAEQEIIEGDKWNDAHHR
Ga0209333_10307901	3300027676	Forest Soil	MNKIAIASLSAVLVTTIALGYEIHHPNLRDAYGAADTAIHHIQEAQAANKGVEFGGHGDKALDALRHAQQELIEADKWNDAHHR
Ga0209139_103063101	3300027795	Bog Forest Soil	MKMNAIAALSVLLATAAIAYQIHHPNLASAYESADAAIKHVQDAQAANKGIEFGGHADRAIEAFRQAQQELIEADKYNDAHQKK
Ga0209517_100245633	3300027854	Peatlands Soil	MKKTAIVLASVLLATVAVSYEIHHPNLKDAYDAAEKGIEHVKHAQEHNKGIEFGGHAEKAIEAFKHAQQELIEGDKYNDMHQKK
Ga0209579_100060226	3300027869	Surface Soil	MKAFLIGSLSILVATAVYAYEIHHPNLRDAYAAAEQGIHHIQEAQAANKGLEFGGHAEKALDHFKQAQAELVEGDKWNDAHHHR
Ga0209624_102952862	3300027895	Forest Soil	MQKIVIASLAVLATTTVALAYEIHHPNLRDAYAATENAIHHIKDAQAANKGIEFGGHGDKALEALQHAEQELIEGDKYNDAHHR
Ga0209006_101797312	3300027908	Forest Soil	MKKIVIASLAVLVTTMALAYEIHHPNLRDAYGATESAIHHIQEAQAANKGIEFGGHAEKALEALRHAEQEIIAGDQWNDAHHR
Ga0265354_100030112	3300028016	Rhizosphere	MNKIVIASLSAVLVATIAVGYEIHHPNLRDAYGATENAIHHVQEAQANNKGLEFGGHAEKAIDALRHAQQELVEGDKWNDAHHK
Ga0265357_10054492	3300028023	Rhizosphere	MNKIVIASLSAVLVTTIAVGYEIHHPNLRDAYGATENAIHHIQAAQANNKGLEFGGHAEKAIDALRHAQQELVEGDKWNDAHHK
Ga0302156_100160405	3300028748	Bog	MKKILIGSLSAVLLTTVALAYEIRHPNLRDAHHDAGSAIGHIAEAQKMNKGVELGGHAERAVELLRQAQAELVEADQWNDAHHK
Ga0302278_104213511	3300028866	Bog	MKKIVIAALSVVLTSIALGYEIHHPNLKSAYADAENAIQHIHAAQAANKGVEFGGHADLALEALKHVEQELIEGDKYNDAHHK
Ga0311362_104665482	3300029913	Bog	MKKIVIASLSAVLVTTVAMAYEIHHPNLRDAHHDAEMGINHIQNAQQANKGVEFGGHAEKAINLLRQAQAEIVEADKWNDAHHH
Ga0311359_111062432	3300029914	Bog	IASLSAVLVTTVAMAYEIHHPNLRDAHHDAEMGINHIQNAQQANKGVEFGGHAEKAINLLRQAQAEIVEADKWNDAHHH
Ga0311363_107021161	3300029922	Fen	VIASLSAVLVTTVAMAYEIHHPNLRDAHHDAEMGINHIQNAQQANKGVEFGGHAEKAINLLRQAQAEIVEADKWNDAHHH
Ga0311328_110849301	3300029939	Bog	VNKVVIASLAAALVTTVAFAYEIHHPNLKDAYEAADIAIKHVHEAQANNKGVEFGGHAEKAVDALEHAKRELIEADKWNDAHHH
Ga0311331_107807582	3300029954	Bog	MKKIYIAAMSAVLVTTVAMAYEIHHPNLRDAHAAAENAIHHVQLAQAANKGVEFGGHAEKAIDLLKHAQEELIEADKWNDAHHH
Ga0311342_113394171	3300029955	Bog	MKKIYIAAMSAVLVTTVAMAYEIHHPNLRDAHAAAENAIHHVQLAQAANKGVEFGGHAEKAIDLLKHAQEELIEADKW
Ga0311370_121235091	3300030503	Palsa	MKKIVIASLAVLVTTMALAYEIHHPNLRDAYGATESAIHHIQEAQAANKGIEFGGHAEKALEALRHAEQEIIAADQWNDAHHR
Ga0210252_106586241	3300030548	Soil	MLGAATAQADSTTINPPQGKTMRKIAVVLGSVFLATAAVSYDIHHPNLRDAYQAAQMAIQHIQEAQAANKGVEFGGHADKAINALQHAQQELIEGDKFNDARHHQ
Ga0138298_17077242	3300031015	Soil	GEIMRKIVIASLAVLVTTVALAYELHHPNLRDAYGATENAIHHIEKAQAANQGVEFGGHGDKALEALRHAEQELIEGDKWNDAHHR
Ga0170823_104258103	3300031128	Forest Soil	AAVLVTTVALAYEIRHPNLRDAYGAAENAIHHIQAAQANNKGLEFGGHAEKAIDALRHAQRELIEADKWNSEHHR
Ga0170823_171010971	3300031128	Forest Soil	NMKKLVIASLAAVLVTTVALAYEIHHPNLRDALGAAENAIHHIQAAQANNKGLEFGGHAEKAIDALKHAQQELIEADKWNDARHR
Ga0302307_106952661	3300031233	Palsa	MKKIVIASLAVLVTTMALAYEIHHPNLRDAYGATESAIHHIQEAQAANKGIEFGGHAEKALEALRHAEQEI
Ga0302187_100043368	3300031259	Bog	MKKILIGSLSAVLLTTVALAYEIRHPNLRDAHHDAGSAIGHIAEAQKMNKGVEFGGHAERAVELLRQAQAELVE
Ga0170818_1120202502	3300031474	Forest Soil	MKKIVIASLAVLATTVALAYEIRHPNLRDAYGATENAIHHIEEAQAANKGVEFGGHGDKALEALRHAQQELIEGDKWNDAHRR
Ga0310686_1005970511	3300031708	Soil	MKKTAFVLGSVLLAAVAVGYEIHHPNLRDAYQACEDGIKHVKEAQAYNKGIEFGGHADRALEAFRHAEQELILGDQYNDAHQKK
Ga0310686_1016256792	3300031708	Soil	MNKIVIASLSAVLVATIAVGYEIHHPNLRDAYGATENAIHHVQEAQAKNKGLEFGGHAEKAIDALRHAQQELIEGDKWNDAHHK
Ga0310686_1029775973	3300031708	Soil	MNKIVIASLSAVLVTTIAVGYEIHHPNLRDAYGATENAIHHIQEAQANNKGLEFGGHAEKAIDALRHAQQELVEGDKWNDAHHK
Ga0310686_1057775201	3300031708	Soil	VTTIAVGYEIHHPNLRDAYGATETAIHHIQEAQAINKGLEFGGHADKALDALRHAQQELIEGDKWNDAHHK
Ga0310686_1093823407	3300031708	Soil	MRKIAVVLGSVFLATAAVSYDIHHPNLRDAYQAAQMAIQHIQEAQAANKGVEFGGHADKAINALQHAQQELIEGDKFNDARHHQ
Ga0310686_1127526042	3300031708	Soil	MFCEPSNIALINSLYRKGKIMKKIAIASLSAVLVATIAVGYELHHPNLRDAYGAAENAIHHVQEAQAANKGVEFGGHAEKAIDALRHAQQELIEGDKWNDAHHK
Ga0307476_100333413	3300031715	Hardwood Forest Soil	MNKIVIASLSAVLVATIAVGYEIHHPNLRDASGATENAIHHVQAAQANNKGLEFGGHAEKAIDALRHAQQELIEGDKWNDAHHK
Ga0307476_101516502	3300031715	Hardwood Forest Soil	MNRILIASLSAAVLVTTIAVGYEIHHPNLRDAFGATENAIHHIQAAQANNKGLEFGGHAEKAIDALRHAQQELVEGDKWNDAHHR
Ga0307474_100020726	3300031718	Hardwood Forest Soil	MKKLVIASLAAALVTTVAVAYEIHHPNLRDALGATENAIHHVQAAQANNKGLEFGGHAEKAIDALRHAQQELVEADKWNDAHHR
Ga0307478_101170293	3300031823	Hardwood Forest Soil	MNKIVIASLSAVLVATIAVGYEIHHPNLRDAYGATENAIHHVQAAQANNKGLEFGGHAEKAIDALRHAQQELIEGDKWNDAHHK
Ga0307478_104065493	3300031823	Hardwood Forest Soil	MKKLVIASLAAALVTTVAVAYEIHHPNLRDAFGATENAIHHVQAAQANNKGLEFGGHAEKAIDALRHAQQELVEADKWNDAHH
Ga0311301_1000331950	3300032160	Peatlands Soil	MKKTAIVAISVLLATAAIAYEIHHPNLKDAYGAIENAIKHIHEAQAANKGIEFGGHADGALDALKHAQQELIEGDKYNDMHQKK
Ga0311301_115693842	3300032160	Peatlands Soil	MRKTAIAAFAVLLATAAIAYEIHHPNLRDAYGATENAIKHIQEAQAKNKGIEFGGHAEKAIDHLRMAQQELIEGDKYNDMHHK
Ga0348332_126239182	3300032515	Plant Litter	DDPFMALINSLYRKGKIMKKIAIASLSAVLVATIAVGYELHHPNLRDAYGAAENAIHHVQEAQAANKGVEFGGHAEKAIDALRHAQQELIEGDKWNDAHHK
Ga0348332_142863752	3300032515	Plant Litter	MNKIVIASLSAVLVTTVAFAYEIHHPNLRDAYGAADTAIHHIQEAQAANKGVEFGGHADKALDALRHAQAELIEADKWNDAHHH
Ga0335074_1000036448	3300032895	Soil	MKKTVIAALTAVLASTIALAYEIHHPNLRDAYGATENAIHHIQEAQAANQGLEFGGHAQKALDALQRAERELIAADRWNDAHHR
Ga0335074_1000125620	3300032895	Soil	MKKVVIASLAAVLVTTIAMAYEIHHPNLRDAYGATENAIHHVQEAQAANQGVEFGGHARKALDALNRAQQEIIAADKWNDAHHR
Ga0335074_102205972	3300032895	Soil	MKRFVIASLSAALVTSVALAYEIHHPNLRDAHQAAEMAIHHIEIAQRDNQGLEFGGHARRAIDLLRRAQQELVEADKWNDAHHR
Ga0335075_102906702	3300032896	Soil	MKKIVIASLGAVLVTTVAFAYEIHHPNLNDAYGATETAIQHIREAQGNNRRDGEFGGHANAAIGDLRMAEREIAAADRWNDMHHHH
Ga0370494_024574_282_533	3300034130	Untreated Peat Soil	MHKTVIAALSMLLATAAVGYEIHHSNLRDAYHDIDTAMKHLQLAEAANRGIEFGGHAEKAMDALLRAQQELVEGDKWNDAHRR
Ga0370492_0247823_99_353	3300034282	Untreated Peat Soil	MKKIVIASLSAVLVTTVAMAYEIHHPNLRDAHHDAGMGINHIQSAQQANKGVEFGGHAEKAIDLLRQAQAEIVEADKWNEAHHH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087111

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences