2236876009: Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-0p8-Hyp-75m

Overview

Basic Information

• IMG/M Taxon OID: 2236876009
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047387 | Gp0054210 | Ga0010951
• Sample Name: Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-0p8-Hyp-75m
• Sequencing Status: Permanent Draft
• Sequencing Center: University of South Carolina
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 95066886
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Archaea	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine And Estuarine Microbial Communities From Columbia River Coastal Margin
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → estuary → estuarine water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Newport Hydroline 10 km (NH10)
• Coordinates
  • Lat. (^o): 44.651
  • Long. (^o): -124.295
  • Alt. (m): N/A
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000200	Metagenome / Metatranscriptome	1633	Y
F006870	Metagenome / Metatranscriptome	363	Y
F015151	Metagenome / Metatranscriptome	257	Y
F018173	Metagenome / Metatranscriptome	236	N
F025141	Metagenome / Metatranscriptome	203	Y
F055206	Metagenome / Metatranscriptome	139	Y
F059342	Metagenome / Metatranscriptome	134	N
F093867	Metagenome / Metatranscriptome	106	N
F101148	Metagenome / Metatranscriptome	102	N
F103255	Metagenome / Metatranscriptome	101	N
F104912	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
none_p038927	Not Available	541
none_p062732	Not Available	585
none_p067881	Not Available	517
none_p085654	All Organisms → cellular organisms → Archaea	516
none_p099931	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	501
none_p103440	Not Available	521
none_p105655	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	516
none_p129031	Not Available	520
none_p129392	Not Available	522
none_p135101	Not Available	518
none_p147937	Not Available	527
none_p152507	Not Available	504
none_p223555	Not Available	504
none_p267221	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
none_p038927	none_0389271	F055206	IILESSVFRRIGMKFLYVDVDNRKVVGLFRNSNEEIIKLNIRELQILAQKERYILNSNILPELLEALKAMGQYQKANRPWWMRIFSVLD
none_p055724	none_0557242	F000200	MKMIKVYDFKCTEGHYFEEFVEDGVTTSRCGCGANATRVASATPCVLDGASGDFPGRHIKWVREHEQAERK
none_p062732	none_0627321	F093867	MKKLIVLAVIFQTITSCGENSLPITNQKNVRLDSFESMRYNIFEEVKEDSLEIAKVM
none_p067881	none_0678811	F018173	VADYLNINGKVAIAGQMNYQFVQDPSFKAGTFAFAAGSGGGTPWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIGGNGSIDMDHYYTLVNFYLELGATGXDSVDTSDTTFIDMTPTAPTTGNVEITASLSATGTPDN
none_p085654	none_0856541	F025141	TIQYYMIQCEYCPRGFIETTNGLAEKTFHELLHEPEVVNK
none_p099931	none_0999311	F101148	MTTKISITTAVKILNSNKDFIFYKVEDNKVIDFTLTNDISRFRTRYNNKFKIVADIKKQIKTNLKIN
none_p103440	none_1034402	F059342	MSTTKYNGYTDFNTWRVFHDTLSGIDFESKVTADELKEISLGIVLSNFEMQRGSHLVEEYAELFIELADFEDIAESINYDIK
none_p105655	none_1056551	F006870	MKKISLFFLLVLHLALTSKASSLETKLSPQGSDKYNFHIIGDAKTSEKKLRDVFKNKVSEVCGTRFEIINIKTDYLNNEGLKNN
none_p129031	none_1290311	F015151	MITLKNGLILSADNNGFESFNHLTAKIDPKSFTKFNELPDIFYKELFEDDRTLLTRIDHPELAMILERTKR
none_p129392	none_1293921	F018173	MAIIYSYPYDQTITDTDAWVGTDSVNRQTKQYTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKSGTFAFAAGSGGGTPWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIG
none_p135101	none_1351011	F015151	VITLKNGLIISANNDGFESMNHLTGKIDRDSFTEFKDLPDIFYKELLEDDRNTLTKIEDETLVTILE
none_p147937	none_1479371	F103255	TADLLQELSMYINLNYEDDWYLQEKVNELKTRIYEQ
none_p152507	none_1525071	F104912	YVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTQGKGSGSKGKSFSHTKLWNHYNQPVTTN
none_p223555	none_2235551	F018173	KAVADYLNINGKVAIAGQMNYQFVQDPSFKSGTFAFAAGSGGGTPWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIGGNGSIDMDHYYTLVNFLYLELGATGVDSVDTSDTTFIDMTPTTPTTVM
none_p267221	none_2672212	F018173	MAIIYSYPYDQTITDTDAWVGTDSVNRQTKQYTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKAGTFAFAAGSGGGTSWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYI