NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F104912

Metagenome / Metatranscriptome Family F104912

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F104912
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 71 residues
Representative Sequence MMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Number of Associated Samples 87
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 14.00 %
% of genes near scaffold ends (potentially truncated) 42.00 %
% of genes from short scaffolds (< 2000 bps) 78.00 %
Associated GOLD sequencing projects 75
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (70.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater
(27.000 % of family members)
Environment Ontology (ENVO) Unclassified
(45.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(93.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 54.79%    β-sheet: 0.00%    Coil/Unstructured: 45.21%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF02151UVR 2.00
PF08291Peptidase_M15_3 1.00
PF03819MazG 1.00
PF02867Ribonuc_red_lgC 1.00
PF13619KTSC 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 1.00


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A70.00 %
All OrganismsrootAll Organisms30.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573025|GS310G0146KB_1113212428056Not Available904Open in IMG/M
2189573025|GS310G0146KB_1113212720790Not Available795Open in IMG/M
2236876009|none_p152507Not Available504Open in IMG/M
2236876010|none_p0251400Not Available557Open in IMG/M
3300000928|OpTDRAFT_10090776Not Available572Open in IMG/M
3300000930|BpDRAFT_10034100All Organisms → Viruses → Predicted Viral1134Open in IMG/M
3300001348|JGI20154J14316_10057205Not Available1579Open in IMG/M
3300001352|JGI20157J14317_10077523All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1318Open in IMG/M
3300003580|JGI26260J51721_1009757All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium2585Open in IMG/M
3300003580|JGI26260J51721_1054647Not Available615Open in IMG/M
3300004279|Ga0066605_10342873Not Available543Open in IMG/M
3300005824|Ga0074474_1326631All Organisms → cellular organisms → Bacteria1795Open in IMG/M
3300005825|Ga0074476_1072921All Organisms → Viruses → Predicted Viral1833Open in IMG/M
3300006789|Ga0098054_1057421Not Available1483Open in IMG/M
3300007540|Ga0099847_1021525All Organisms → Viruses → Predicted Viral2097Open in IMG/M
3300007543|Ga0102853_1047745Not Available747Open in IMG/M
3300007552|Ga0102818_1000471All Organisms → cellular organisms → Bacteria9507Open in IMG/M
3300007637|Ga0102906_1003268Not Available5503Open in IMG/M
3300007647|Ga0102855_1010592All Organisms → Viruses → Predicted Viral2565Open in IMG/M
3300007658|Ga0102898_1136486Not Available574Open in IMG/M
3300007665|Ga0102908_1002733All Organisms → Viruses → Predicted Viral3493Open in IMG/M
3300007667|Ga0102910_1003258All Organisms → Viruses → Predicted Viral3805Open in IMG/M
3300007981|Ga0102904_1023897All Organisms → Viruses → Predicted Viral1362Open in IMG/M
3300008961|Ga0102887_1004017All Organisms → cellular organisms → Bacteria6100Open in IMG/M
3300008995|Ga0102888_1027437All Organisms → Viruses → Predicted Viral1067Open in IMG/M
3300009076|Ga0115550_1227938Not Available617Open in IMG/M
3300009142|Ga0102885_1000699Not Available7299Open in IMG/M
3300009438|Ga0115559_1057238All Organisms → Viruses → Predicted Viral1648Open in IMG/M
3300009440|Ga0115561_1161278Not Available873Open in IMG/M
3300009467|Ga0115565_10078182Not Available1580Open in IMG/M
3300009467|Ga0115565_10318060Not Available706Open in IMG/M
3300009505|Ga0115564_10320512Not Available772Open in IMG/M
3300009505|Ga0115564_10596564Not Available522Open in IMG/M
3300011118|Ga0114922_11361837Not Available572Open in IMG/M
3300011253|Ga0151671_1063384All Organisms → Viruses → Predicted Viral1344Open in IMG/M
3300017749|Ga0181392_1238166Not Available514Open in IMG/M
3300017760|Ga0181408_1085318Not Available827Open in IMG/M
3300019214|Ga0180037_1211521Not Available627Open in IMG/M
3300020166|Ga0206128_1018900All Organisms → cellular organisms → Bacteria3979Open in IMG/M
3300020185|Ga0206131_10147190Not Available1242Open in IMG/M
3300021085|Ga0206677_10006016Not Available9384Open in IMG/M
3300021371|Ga0213863_10060952All Organisms → Viruses → Predicted Viral1914Open in IMG/M
3300021957|Ga0222717_10079330All Organisms → Viruses → Predicted Viral2078Open in IMG/M
3300022053|Ga0212030_1023257Not Available843Open in IMG/M
3300022053|Ga0212030_1029590Not Available758Open in IMG/M
3300022169|Ga0196903_1036537Not Available575Open in IMG/M
3300022202|Ga0224498_10077798Not Available948Open in IMG/M
(restricted) 3300023112|Ga0233411_10271096Not Available567Open in IMG/M
(restricted) 3300023210|Ga0233412_10078165All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1371Open in IMG/M
(restricted) 3300023210|Ga0233412_10221841Not Available823Open in IMG/M
(restricted) 3300023210|Ga0233412_10583763Not Available508Open in IMG/M
3300023693|Ga0232112_1001850All Organisms → Viruses → Predicted Viral2200Open in IMG/M
3300023702|Ga0232119_1013257Not Available1274Open in IMG/M
3300024180|Ga0228668_1000471Not Available16923Open in IMG/M
3300024236|Ga0228655_1011599All Organisms → cellular organisms → Bacteria2311Open in IMG/M
3300024236|Ga0228655_1042648All Organisms → Viruses → Predicted Viral1060Open in IMG/M
3300024242|Ga0228673_1068186Not Available630Open in IMG/M
3300024281|Ga0228610_1005006Not Available1235Open in IMG/M
3300024291|Ga0228660_1055724Not Available757Open in IMG/M
3300024296|Ga0228629_1099748Not Available774Open in IMG/M
3300024313|Ga0228624_1056368Not Available769Open in IMG/M
3300024314|Ga0228657_1035640Not Available1115Open in IMG/M
3300024318|Ga0233400_1096963Not Available668Open in IMG/M
3300024319|Ga0228670_1017041All Organisms → cellular organisms → Bacteria1925Open in IMG/M
3300024320|Ga0233398_1035013All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1361Open in IMG/M
3300024322|Ga0228656_1103071Not Available609Open in IMG/M
3300024326|Ga0228652_1142171Not Available517Open in IMG/M
3300024329|Ga0228631_1020929All Organisms → Viruses → Predicted Viral2096Open in IMG/M
3300024343|Ga0244777_10044538All Organisms → cellular organisms → Bacteria2833Open in IMG/M
3300024348|Ga0244776_10003639All Organisms → cellular organisms → Bacteria14831Open in IMG/M
3300024415|Ga0228662_1116034Not Available613Open in IMG/M
(restricted) 3300024518|Ga0255048_10410287Not Available656Open in IMG/M
3300025084|Ga0208298_1002146Not Available6745Open in IMG/M
3300025168|Ga0209337_1106784All Organisms → cellular organisms → Bacteria1292Open in IMG/M
3300025168|Ga0209337_1326261Not Available540Open in IMG/M
3300025483|Ga0209557_1049941Not Available1064Open in IMG/M
3300025483|Ga0209557_1060382Not Available913Open in IMG/M
3300025483|Ga0209557_1067908All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon827Open in IMG/M
3300025543|Ga0208303_1024711Not Available1661Open in IMG/M
3300025543|Ga0208303_1084539Not Available697Open in IMG/M
3300025626|Ga0209716_1000397Not Available42436Open in IMG/M
3300025626|Ga0209716_1171742Not Available543Open in IMG/M
3300025637|Ga0209197_1121100Not Available742Open in IMG/M
3300025705|Ga0209374_1113094Not Available810Open in IMG/M
3300025873|Ga0209757_10073480Not Available1026Open in IMG/M
3300026462|Ga0247568_1035613Not Available961Open in IMG/M
3300026505|Ga0228647_1089313Not Available742Open in IMG/M
3300027230|Ga0208171_1015139Not Available772Open in IMG/M
3300027233|Ga0208678_1045766Not Available942Open in IMG/M
3300027249|Ga0208175_1016517Not Available796Open in IMG/M
3300027250|Ga0208310_1033026Not Available802Open in IMG/M
3300027253|Ga0208680_1000005Not Available38507Open in IMG/M
3300028008|Ga0228674_1071501Not Available1258Open in IMG/M
3300028135|Ga0228606_1137773Not Available607Open in IMG/M
3300028136|Ga0228608_1112839Not Available751Open in IMG/M
3300028273|Ga0228640_1025148Not Available1164Open in IMG/M
3300028287|Ga0257126_1029342All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2502Open in IMG/M
3300028396|Ga0228643_1037484Not Available1235Open in IMG/M
3300028416|Ga0228614_1093057Not Available558Open in IMG/M
3300031519|Ga0307488_10563935Not Available668Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater27.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine19.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine10.00%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous6.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine5.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater5.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine5.00%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine2.00%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine2.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.00%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater2.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine2.00%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine2.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater2.00%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)2.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface1.00%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.00%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.00%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.00%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573025Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-FOS-0p8-Hyp-75mEnvironmentalOpen in IMG/M
2236876009Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-0p8-Hyp-75mEnvironmentalOpen in IMG/M
2236876010Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-0p1-Hyp-75mEnvironmentalOpen in IMG/M
3300000928Marine plume microbial communities from the Columbia River - 25 PSUEnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300001348Pelagic Microbial community sample from North Sea - COGITO 998_met_04EnvironmentalOpen in IMG/M
3300001352Pelagic Microbial community sample from North Sea - COGITO 998_met_07EnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300005824Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.180_BBCEnvironmentalOpen in IMG/M
3300005825Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.184_BBBEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007543Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3EnvironmentalOpen in IMG/M
3300007552Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571EnvironmentalOpen in IMG/M
3300007637Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02EnvironmentalOpen in IMG/M
3300007647Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02EnvironmentalOpen in IMG/M
3300007658Estuarine microbial communities from the Columbia River estuary - metaG 1555A-3EnvironmentalOpen in IMG/M
3300007665Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3EnvironmentalOpen in IMG/M
3300007667Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3EnvironmentalOpen in IMG/M
3300007981Estuarine microbial communities from the Columbia River estuary - metaG 1556A-3EnvironmentalOpen in IMG/M
3300008961Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02EnvironmentalOpen in IMG/M
3300008995Estuarine microbial communities from the Columbia River estuary - metaG 1551A-3EnvironmentalOpen in IMG/M
3300009076Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511EnvironmentalOpen in IMG/M
3300009142Estuarine microbial communities from the Columbia River estuary - metaG 1550B-3EnvironmentalOpen in IMG/M
3300009438Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506EnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009467Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530EnvironmentalOpen in IMG/M
3300009505Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523EnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300011253Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeateEnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300019214Estuarine microbial communities from the Columbia River estuary - R.1189 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022202Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_21EnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300023693Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 29R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023702Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 82R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024180Seawater microbial communities from Monterey Bay, California, United States - 82DEnvironmentalOpen in IMG/M
3300024236Seawater microbial communities from Monterey Bay, California, United States - 67DEnvironmentalOpen in IMG/M
3300024242Seawater microbial communities from Monterey Bay, California, United States - 91DEnvironmentalOpen in IMG/M
3300024281Seawater microbial communities from Monterey Bay, California, United States - 11DEnvironmentalOpen in IMG/M
3300024291Seawater microbial communities from Monterey Bay, California, United States - 74DEnvironmentalOpen in IMG/M
3300024296Seawater microbial communities from Monterey Bay, California, United States - 36DEnvironmentalOpen in IMG/M
3300024313Seawater microbial communities from Monterey Bay, California, United States - 29DEnvironmentalOpen in IMG/M
3300024314Seawater microbial communities from Monterey Bay, California, United States - 70DEnvironmentalOpen in IMG/M
3300024318Seawater microbial communities from Monterey Bay, California, United States - 46DEnvironmentalOpen in IMG/M
3300024319Seawater microbial communities from Monterey Bay, California, United States - 85DEnvironmentalOpen in IMG/M
3300024320Seawater microbial communities from Monterey Bay, California, United States - 38DEnvironmentalOpen in IMG/M
3300024322Seawater microbial communities from Monterey Bay, California, United States - 68DEnvironmentalOpen in IMG/M
3300024326Seawater microbial communities from Monterey Bay, California, United States - 64DEnvironmentalOpen in IMG/M
3300024329Seawater microbial communities from Monterey Bay, California, United States - 39DEnvironmentalOpen in IMG/M
3300024343Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fractionEnvironmentalOpen in IMG/M
33000243480.2um to 3um size fraction coassemblyEnvironmentalOpen in IMG/M
3300024415Seawater microbial communities from Monterey Bay, California, United States - 76DEnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025483Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025637Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512 (SPAdes)EnvironmentalOpen in IMG/M
3300025705Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m (SPAdes)EnvironmentalOpen in IMG/M
3300025873Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)EnvironmentalOpen in IMG/M
3300026462Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 17R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300026505Seawater microbial communities from Monterey Bay, California, United States - 59DEnvironmentalOpen in IMG/M
3300027230Estuarine microbial communities from the Columbia River estuary - metaG 1551A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027233Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027249Estuarine microbial communities from the Columbia River estuary - metaG 1557A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027250Estuarine microbial communities from the Columbia River estuary - metaG 1557A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027253Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300028008Seawater microbial communities from Monterey Bay, California, United States - 1D_rEnvironmentalOpen in IMG/M
3300028135Seawater microbial communities from Monterey Bay, California, United States - 7DEnvironmentalOpen in IMG/M
3300028136Seawater microbial communities from Monterey Bay, California, United States - 9DEnvironmentalOpen in IMG/M
3300028273Seawater microbial communities from Monterey Bay, California, United States - 51DEnvironmentalOpen in IMG/M
3300028287Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120mEnvironmentalOpen in IMG/M
3300028396Seawater microbial communities from Monterey Bay, California, United States - 55DEnvironmentalOpen in IMG/M
3300028416Seawater microbial communities from Monterey Bay, California, United States - 15DEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GS310G0146KB_001541102189573025Marine EstuarineMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTQGKGSGSKGKSFSHTKLWNHYNQPVTTN
GS310G0146KB_003922402189573025Marine EstuarineMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTQGKGSGSKGKSFSHTKLWNHYN
none_15250712236876009Marine EstuarineYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTQGKGSGSKGKSFSHTKLWNHYNQPVTTN
none_025140012236876010Marine EstuarineMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTQGKGSGSKGKSFSHTKLW
OpTDRAFT_1009077633300000928Freshwater And MarineMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGKSFSHTKLWNHYNQPVTTN*
BpDRAFT_1003410033300000930Freshwater And MarineMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN*
JGI20154J14316_1005720553300001348Pelagic MarineMMTMKEVCAYVAQKRKADAIHHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNEPVTTN*
JGI20157J14317_1007752333300001352Pelagic MarineMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNEPVFTN*
JGI26260J51721_100975733300003580MarineMMTMKEACEYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNEPVTTN*
JGI26260J51721_105464723300003580MarineIIKNNMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGFTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN*
Ga0066605_1034287323300004279MarineMKEACAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN*
Ga0074474_132663123300005824Sediment (Intertidal)MTMKEVCVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHYHQPVTTN*
Ga0074476_107292143300005825Sediment (Intertidal)MTMKEVCVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGASSKGRSFSHTRLWNHYHQPVTTN*
Ga0098054_105742133300006789MarineMMTMKEVCAYVAQKRKADAIHHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRTYSHTKLWNHYNEPVTTN*
Ga0099847_102152523300007540AqueousMMTMKEVCEYVAQKRKADAIHHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN*
Ga0102853_104774523300007543EstuarineMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGKSFSHTKLWNHYNQPVTTN*
Ga0102818_1000471113300007552EstuarineMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN*
Ga0102906_100326843300007637EstuarineMKVMTMKEACVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGGKGRSFSHTRLWNHYHQPVTTN*
Ga0102855_1010592103300007647EstuarineKTLKYITMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGKSFSHTKLWNQYNQPVTTN*
Ga0102898_113648633300007658EstuarineMKVMTMKEVCVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHYHKPVTTN*
Ga0102908_100273313300007665EstuarineTIKENNMKVMTMKEVCVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHYHKPVTTN*
Ga0102910_100325833300007667EstuarineMKVMTMKEACVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHYHKPVTTN*
Ga0102904_102389743300007981EstuarineMKVMTMKEVCVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHYHQPVTTN*
Ga0102887_100401753300008961EstuarineMKVMTMKEACVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHYHQPVTTN*
Ga0102888_102743733300008995EstuarineMKVMTMKEACVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGASSKGRSFSHTRLWNHYHQPVTTN*
Ga0115550_122793833300009076Pelagic MarineMKVMTMKETCVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNNHHHPA
Ga0102885_100069913300009142EstuarineMKEACVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGGKGRSFSHTRLWNHYHQPVTTN*
Ga0115559_105723823300009438Pelagic MarineMKVMTMKETCVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHHHHPA*
Ga0115561_116127823300009440Pelagic MarineMMTMKEACAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNEPVTTN*
Ga0115565_1007818213300009467Pelagic MarineMMTMKEACAYVAQKRKTEAKLHRETVTNGDYCNPLTAKEYRKIKVNAKGAGARGRKFAHTKLWNHYNVPVR*
Ga0115565_1031806013300009467Pelagic MarineMMTMKEACAYVTQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNEPV
Ga0115564_1032051213300009505Pelagic MarineMMTMKEACAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSYSHTKLWDSQNRS
Ga0115564_1059656433300009505Pelagic MarineMMTMKEACAYVTQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSYSHTKLW
Ga0114922_1136183713300011118Deep SubsurfaceIDNIYESKIITMMTMKEVCAYVAQKRKTEAKLHRETVTNGDYCNPLTAKEYRKIKVNAKGAGARGRKFAHTKLWNHYNVPVR*
Ga0151671_106338443300011253MarineFKMIIMMTMKEVCVYVAQKRKTEAKLHRETVTNGDYCNPLTAKEYRKIKVNAKGAGARGRKFAHTKLWNHYNVPVK*
Ga0181392_123816633300017749SeawaterMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTT
Ga0181408_108531833300017760SeawaterMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNH
Ga0180037_121152123300019214EstuarineMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0206128_1018900113300020166SeawaterMMTMKEVCAYVAQKRKADAIHHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNEPVTTN
Ga0206131_1014719013300020185SeawaterMMTMKEACAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSYSHTKLWESQNRS
Ga0206677_1000601623300021085SeawaterMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0213863_1006095233300021371SeawaterMMTMKEACEYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNEPVTTN
Ga0222717_1007933043300021957Estuarine WaterMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0212030_102325723300022053AqueousMMTMKEACAYVAQKRKTEAKLHRETVTNGDYCNPLTAKEYRKIKVNAKGAGARGRKFAHTKLWNHYNVPVR
Ga0212030_102959023300022053AqueousMMTMKEACAYVAQKRKTEAKLHRETVTNGDYCNPLTAKEYRKIKVNAKSAGARGRKFAHTKLWNHYNVPVR
Ga0196903_103653723300022169AqueousAYVAQKRKTEAKLHRETVTNGDYCNPLTAKEYRKIKVNAKGAGARGRKFAHTKLWNHYNVPVR
Ga0224498_1007779813300022202SedimentMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTQGKGSGSKGKSFSHTKLWNHYNQPVTTN
(restricted) Ga0233411_1027109633300023112SeawaterMMTMKEACEYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNEP
(restricted) Ga0233412_1007816543300023210SeawaterMKEACAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
(restricted) Ga0233412_1022184113300023210SeawaterKNNMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGFTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
(restricted) Ga0233412_1058376323300023210SeawaterKNNMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNEPVTTN
Ga0232112_100185053300023693SeawaterMKEVCAYVAQKRKADAIHHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0232119_101325743300023702SeawaterMKEVCAYVAKKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0228668_1000471353300024180SeawaterMMTMKEVCAYVAQKRKADAIHHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0228655_101159983300024236SeawaterMMTMKEVCEYVAQKRKADAMHHRKTVTQGEYCSGLTAKEYRKVKTKGKGAGSKGRSFSHTKLWNHYNQPVTTN
Ga0228655_104264833300024236SeawaterMMTMKEVCEYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNKPVTTN
Ga0228673_106818613300024242SeawaterMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPV
Ga0228610_100500613300024281SeawaterMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0228660_105572433300024291SeawaterLKYITMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0228629_109974813300024296SeawaterMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPV
Ga0228624_105636813300024313SeawaterMMTMKEVCEYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNH
Ga0228657_103564013300024314SeawaterKYITMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0233400_109696313300024318SeawaterMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKL
Ga0228670_101704113300024319SeawaterMKEVCAYVAKKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNKPVTTN
Ga0233398_103501363300024320SeawaterMTMKEVCEYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNKPVTTN
Ga0228656_110307113300024322SeawaterMMTMKEVCAYVAQKRKADAIHHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLW
Ga0228652_114217123300024326SeawaterVCAYVAKKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0228631_102092933300024329SeawaterMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0244777_1004453833300024343EstuarineMTMKEACVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHYHKPVTTN
Ga0244776_10003639123300024348EstuarineMTMKEVCVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHYHKPVTTN
Ga0228662_111603413300024415SeawaterKEVCAYVAKKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
(restricted) Ga0255048_1041028723300024518SeawaterMMTMKEACAYVAQKRKTEAKLHRENVTNGDYCNPLTAKEYRKVKVKAKGTGARGRKFAHTKLWNHYNVPVR
Ga0208298_1002146163300025084MarineMMTMKEVCAYVAQKRKADAIHHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRTYSHTKLWNHYNEPVTTN
Ga0209337_110678413300025168MarineMMTMKEACAYVAQKRKADALHHRETVTQGEYCSGLTAKEYRRVKTKGKGAGSKGRSYSHTKLW
Ga0209337_132626123300025168MarineMMTMKEVCAYVAQKRKADALHHRETVTQGEYCSGLTAKEYRRVKTKGKGAGSKGRSYSHTKLW
Ga0209557_104994113300025483MarineMMTMKEACAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNEPVTTN
Ga0209557_106038233300025483MarineMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGFTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0209557_106790813300025483MarineMKEACAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNEPVTTN
Ga0208303_102471133300025543AqueousMMTMKEVCEYVAQKRKADAIHHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0208303_108453913300025543AqueousMTMKEVCAYVAQKRKTEAKLHRETVTNGDYCNPLTAKEYRKIKVNAKGAGARGRKFAHTKLWNHYNVPVR
Ga0209716_100039733300025626Pelagic MarineMKVMTMKETCVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHHHHPA
Ga0209716_117174213300025626Pelagic MarineMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSYSHTKLWDSQNRS
Ga0209197_112110023300025637Pelagic MarineMTMKETCVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHHHHPA
Ga0209374_111309413300025705MarineTMKEACAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0209757_1007348033300025873MarineMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGAGSKGRSFSHTKLWNHYNKPVTTN
Ga0247568_103561333300026462SeawaterMMTMKEVCAYVAQKRKSDAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0228647_108931313300026505SeawaterMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLW
Ga0208171_101513923300027230EstuarineMTMKEACVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGASSKGRSFSHTRLWNHYHQPVTTN
Ga0208678_104576633300027233EstuarineYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGGKGRSFSHTRLWNHYHQPVTTN
Ga0208175_101651713300027249EstuarineTIKENNMKVMTMKEVCVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHYHKPVTTN
Ga0208310_103302613300027250EstuarineENNMKVMTMKEVCVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGSKGRSFSHTRLWNHYHKPVTTN
Ga0208680_100000553300027253EstuarineMKVMTMKEACVYVVQKRKADAVQHRKTVTQGEYCSGLTAKEYRKVRTKSKGAGGKGRSFSHTRLWNHYHKPVTTN
Ga0228674_107150133300028008SeawaterMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0228606_113777323300028135SeawaterMMTMKEVCAYVAQKRKADAIHHRKTVTQGEYCSGLTAKEYLKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0228608_111283923300028136SeawaterMKEVCEYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0228640_102514813300028273SeawaterMMTMKEVCAYVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHT
Ga0257126_102934213300028287MarineAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVRTKGKGSGSKGRSFSHTKLWNHYNQPVTTN
Ga0228643_103748413300028396SeawaterMKEVCAYVAKKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSH
Ga0228614_109305713300028416SeawaterMMTMKEVCAYVAQKRKADAIHHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRSFSHTKLWNHYNQP
Ga0307488_1056393513300031519Sackhole BrineMKEACAYVAQKRKAEAKLHRETVTNGDYCNPLTAKEYRKIKVNAKCAGARGRKFAHTKLWNHYNVPVR


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