2199352033: Cave microbial community (Wet rock wall)

Overview

Basic Information

• IMG/M Taxon OID: 2199352033
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047522 | Gp0052439 | Ga0011301
• Sample Name: Cave microbial community (Wet rock wall)
• Sequencing Status: Permanent Draft
• Sequencing Center: Arizona Genomics Institute
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 138876357
• Sequencing Scaffolds: 15
• Novel Protein Genes: 17
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces → Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → speleothem → rock
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006837	Metagenome / Metatranscriptome	363	Y
F007702	Metagenome / Metatranscriptome	346	Y
F011156	Metagenome	294	Y
F018640	Metagenome / Metatranscriptome	234	Y
F020351	Metagenome / Metatranscriptome	224	Y
F031917	Metagenome / Metatranscriptome	181	Y
F038611	Metagenome / Metatranscriptome	165	Y
F042244	Metagenome / Metatranscriptome	158	Y
F053149	Metagenome / Metatranscriptome	141	Y
F064571	Metagenome / Metatranscriptome	128	N
F075268	Metagenome / Metatranscriptome	119	Y
F082508	Metagenome	113	N
F082653	Metagenome / Metatranscriptome	113	Y
F084767	Metagenome	112	N
F095428	Metagenome / Metatranscriptome	105	Y
F095438	Metagenome / Metatranscriptome	105	N
F103541	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
2206797476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513
2206853324	Not Available	508
2206858095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1000
2206860144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504
2206861883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503
2206883651	All Organisms → cellular organisms → Bacteria → Terrabacteria group	642
2206932788	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	545
2206942246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541
2206955258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1974
2206970301	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	533
2206984438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531
2207012775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea → Miltoncostaea oceani	526
2207036400	All Organisms → cellular organisms → Bacteria	523
2207083622	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517
2207089163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
2206797476	2208559137	F007702	TFESGGVVLPNPQASVLVEGVPYGFVWCASDYIDSCTLGNPALLWPDRERQRRYREIVSQVRAWDAELPSRDGGSFVPEILNRITPRFPRPPLWLAVGLIALVLRRPRGWRTIVTLWACAGLVLLIHAASQGVAPEFALPLYPVFIVTALAAIAGDREPGDGLWLRLDEA
2206853324	2208589015	F011156	MATTASITVDANLKARLADLARQAGQEVDEFVEALLRRIAEADVRFERGVPLFPRRPGAPILTVEDVDH
2206856756	2208591319	F031917	VIDQVNNLKLQHLVELSKLGDGCVDLEQRIETWLSEHDVVFNGGPIPFVLMPHFVSPRQVKRVRHAVACLSRV
2206858095	2208593340	F038611	MRMMGADSVAYHKATVLGRADDFPGQALDYYASRGETPLVWGGACVSGWAWWVG
2206860144	2208596193	F075268	MSDAHEHIIDTGKGTFSLDDLGPLMPGMAEVMPLVGERIWKCYYAGRARNQPLARFQLKEAVN
2206861883	2208598709	F095438	ATLAVLASHATLESLVNRLGSRQIASFNQRARFLPKWHDLCERTFGRQLESAADLERLHALRDALAGVTAPPERLDRRSTPPPPEAPSELPAATARWAVDITRRVVLEFHEVAGWERPDW
2206883651	2208629974	F064571	MCIAALVVLLIGYANIRDEIQVAAQMPYVLTGGVGALLLAGLGMVVIRSQDDKATLDRLGEMETTNDELRERVDYLTQLLEAALLPDEASTRARPGKVVTGQTS
2206932788	2208696868	F084767	MQAETASWLNKSRGSFGAAQSRFNDISSMDVNGAGALFMSAEYAMKAVIVEHYGFLPSSFETHHRIVNLSHLIGLWWQLPPDLRAYLADIAPLDPNVLYPPRPRPRPPATN
2206942246	2208709472	F018640	LEERQLFPLIEELVPDDELRRLGLADRDATCAVRRPPLTS
2206955258	2208726491	F053149	MRVVVWGTGVVESRMLWEQAEATEEAAHLAETLSLAWDDVAGPLRWAVEIECPEPDDVLRLVEETSGDDSVLGWSPAPRDVPADWFMVDEDEEENLPLEW
2206970301	2208746454	F020351	MTEMVTSGSMSGGEKRGDGLLGESDNERRRSQSAPPVLYATALDLDSTRMRQRVLEIS
2206984438	2208764891	F095428	QGELAAFVGFYEFSGIPFYIGVGILILSVLLFFYRRAVEDKAKITFRDTNVPTMPNEAQMALLREESTSG
2207012775	2208801633	F082508	PLRFGFADRSTARKGLEVAAGFAIADRLGSIRQKQGPPIGRNGYMLIVWLGSRWLQMEAPGNTAVPFNQYRLLRDFGWEDAGKPARQALRRTLLNLQEARWEGEVNDATTGRKTHEDHFGIIDRVLWPVTSNGQLERPGYIFLGSWFLEQLRNEAGEWLDWALFRDLPPIARKF
2207036400	2208831715	F042244	MVVPGGARVGFQVPDWKGVAWCPVQEILIRRPHWVIEAVPKDPYYLYGKILLRFDKDIFLGSYSSKYDWKGMLINSYAAIRTNIIRVGPGEHWAWAGGAVALAVNWKLDRATTAGIVAGQNVPADSRIPIEPEFFSLQRLVAQGK
2207070834	2208875136	F103541	PLFFLVGAAVLLVAAAAAWRTARADATLIAGTVLGGGALVGVGLLVVSIGPPPLDVDTSKDAFLRRAGLIAELRSAYTDRFIHRWTRYVQWASVPMAIVGFGEADGAAGRILRAWFAVTVAGVGLALATGWLPPDRFVTFGFAIPILAALGIVRLWRRLEARRIVAVVVAGA
2207083622	2208890841	F006837	MLTRREILRQAGKTATVLTTTAPWWLVRQAHAARSAKLVVWNPAALAPQVDKIMQ
2207089163	2208897601	F082653	MYDSTTTVTVGLDVHARSIRLAVVRADELLEERTLAYDEEAVERV