NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 2199352031

2199352031: Cave microbial community (Speleothem B)



Overview

Basic Information
IMG/M Taxon OID2199352031 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0047522 | Gp0053926 | Ga0011321
Sample NameCave microbial community (Speleothem B)
Sequencing StatusPermanent Draft
Sequencing CenterArizona Genomics Institute
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size181900666
Sequencing Scaffolds8
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSpeleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces → Speleothem And Rock Wall Surfaces Microbial Communities From Kartchner Caverns, Benson, Arizona, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → cave wall → rock
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: Arizona
CoordinatesLat. (o)31.837801Long. (o)-110.350292Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001186Metagenome / Metatranscriptome754Y
F005288Metagenome / Metatranscriptome406Y
F030702Metagenome / Metatranscriptome184Y
F039575Metagenome / Metatranscriptome163Y
F045455Metagenome / Metatranscriptome153Y
F049183Metagenome / Metatranscriptome147Y
F052268Metagenome143Y
F058839Metagenome / Metatranscriptome134Y
F077507Metagenome / Metatranscriptome117Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
2206008236Not Available583Open in IMG/M
2206147832All Organisms → cellular organisms → Bacteria529Open in IMG/M
2206160858All Organisms → cellular organisms → Bacteria526Open in IMG/M
2206182271Not Available521Open in IMG/M
2206222535Not Available514Open in IMG/M
2206280846Not Available885Open in IMG/M
2206289761Not Available506Open in IMG/M
2206317553All Organisms → cellular organisms → Bacteria503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
22059304652207550344F001186HGHQLKGIMTFVGAIIEKQTGNQAELARGLGNQEAAVKRLSRLLHNERLAPHRLADAVLAQALRQLPPTGRVRLAIDWTIEGTQHLLVVSLVTGGGRCPSIGELTMPRS
22060082362207646173F005288MGLFAGLFSTPSWQTFILLAEGWALATERHTITTYLWLTGATAIKHFSRFYVFLGCPLYNKRWQLWGAVIRRAAQFSARGHSPSG*PSTIPTKKKAGRQIEGLACYRNGAGSARQEYRTLRGLNFV
22061478322207776272F049183MLRRIPTPARSTTKLEPPYETNGSGIPVSGAIPSTA
22061608582207794118F058839LGVPVDFAVRRPNPTGPGARCRSKLGWAQVRLDESLAALHRYGLDLPAPLVVADSWWSDSKLMAHVADTPHGTLLVQGKATSTFYLTDGRKVKGADVVDEDQDGPFRQSLNARDCRYARLRATSPTYGAVPVLIVDTPREKRLYLRCVATPLQATRLLRLWSRRYWIEQV
22061822712207823027F052268KGYPGLPGTWRGMPYDFVRGGAGLAIPGLPAEVGGCLEGT
22062225352207876382F030702MTALETPIGRRQVLKGFLIAGPTLAVAARVGLAAGTADAFPTKTDEVPDAQDFTDIFVLTQQPTIY
22062808462207952300F039575MLPAAMAKKDPIQKMLAGIDPQPFIWAPKGHVVIMQEKVVDAGGDPDAVLAWVIDHGGDIDRTMPVANTRRGVTSVPKPKGKPYYVVPQAALDA
22062897612207963899F077507MSSTRNTYLRFGAAISIIVVSLAYLAYTGVEQSKSY
22063175532207999406F045455LVPSHWWSIRSCSFCWPYTLVQAHLVLRQRQQLNRGIWERTWQLLSPSFEVVAVYYRQRFCLLTLAEFGRILLDLAEPARGQLREKLRRIEREQYSLLENARPP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.