2088090001: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNB

Overview

Basic Information

• IMG/M Taxon OID: 2088090001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046224 | Gp0052021 | Ga0010983
• Sample Name: Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNB
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Lifesequencing S.L.
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 82333954
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere → Quercus Rhizosphere Microbial Communities From Sierra Nevada National Park, Granada, Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → rhizosphere → soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: Sierra Nevada National Park, Granada, Spain
• Coordinates
  • Lat. (^o): 36.94932
  • Long. (^o): -3.4176
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000382	Metagenome / Metatranscriptome	1210	Y
F001022	Metagenome / Metatranscriptome	804	Y
F013179	Metagenome / Metatranscriptome	273	Y
F014780	Metagenome / Metatranscriptome	260	Y
F026727	Metagenome / Metatranscriptome	197	Y
F031179	Metagenome / Metatranscriptome	183	Y
F044694	Metagenome / Metatranscriptome	154	Y
F054735	Metagenome	139	N
F061299	Metagenome / Metatranscriptome	132	N
F069771	Metagenome	123	N
F096889	Metagenome / Metatranscriptome	104	Y
F101471	Metagenome / Metatranscriptome	102	Y
F105405	Metagenome / Metatranscriptome	100	N
F105522	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
CNB_F6ESG4R02F0AJ0	Not Available	500
CNB_F6ESG4R02FRFLU	All Organisms → cellular organisms → Bacteria → Acidobacteria	500
CNB_F6ESG4R02FX251	Not Available	587
CNB_F6ESG4R02GCP3F	All Organisms → cellular organisms → Bacteria → Acidobacteria	502
CNB_F6ESG4R02GMFQV	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	543
CNB_F6ESG4R02H3F94	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525
CNB_F6ESG4R02H7MDE	All Organisms → cellular organisms → Bacteria → Acidobacteria	540
CNB_F6ESG4R02HLXLW	All Organisms → cellular organisms → Bacteria → Terrabacteria group	528
CNB_F6ESG4R02HNQRV	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	517
CNB_F6ESG4R02HUH8O	Not Available	509
CNB_F6ESG4R02HXT27	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	506
CNB_F6ESG4R02JGWU5	Not Available	529
CNB_F6ESG4R02JHXDV	Not Available	513
CNB_F6ESG4R02JPP3O	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	527

Sequences

Scaffold ID	Protein ID	Family	Sequence
CNB_F6ESG4R02F0AJ0	CNB_00067530	F061299	MSDNVVGGDQQQSLQTEMKERAELISVVLTTVLEEAGYASAVDQARKLFAHTTPAQMEQMKPHFSSLALEFMILAGFFKD
CNB_F6ESG4R02FRFLU	CNB_02135720	F000382	QWLKVESAAAPTWANLPTGTRELLNGKLAGLWGAPSDAAAFDSWPLDKKQGLLLLLHRMRTKGLWHLVKRVTNVYGEGGVGLQFEAWPMIESTLSRRRDFTRRFANHKGTSGGFYETQRGVAILHFLFQEGAPRTWYVHFDLYSPVHSPGSALKHLRYEFLGKVRP
CNB_F6ESG4R02FX251	CNB_02116040	F044694	MKRLKEILDQIATGIKNKLSLPGSFAGNYQMAVIRLKQII
CNB_F6ESG4R02GCP3F	CNB_01611930	F105405	FGQERRVMVQILTVVAICALGGYLLWRYADRIFEPEGVQVTIRLDRPEPGAHLIWDIFNTGPKPVTLTKLIVHGRGSAADTVPLGLPRVLAPQDRITLPTDVDWSLLAARSIAAADASGHEHHASKRQLVAIQDQLRRLIDRRVYNTSARDFIAGAAXLAFGVVIL
CNB_F6ESG4R02GMFQV	CNB_02310690	F014780	VLMLGVDLVNFPKFPKAVESGVTFRKKVLDIRQQLDVDSGAELSDYSGAYRADLRFTDFSKEALAEKVIPWSAACLLVCIEGWTTEVAKRFGTETMHEIEWAAWTDQIAPELDRMQAEFLPAGTVYEDPNRLVAEADRPNTPVVYTGLFTPGPVLAELSKEQVVT
CNB_F6ESG4R02H3F94	CNB_02106790	F001022	MKVVEIVPRERTRLYGMLVAKEAAIRKGGRGTYVRVGRKTKDATRWKHRNYRGSVQLKRAASEVVTAKVQATTAEDERKLLSSFLGFVDRHSGDQVATITIHYR
CNB_F6ESG4R02H7MDE	CNB_02177890	F026727	MTATQLAEYWQLLNDKDEPTTAGIVKWVRRPPDQFPLPHAYMGDLLRFNRKEVDLWAKQEAERRRVQKEKRQLKIA
CNB_F6ESG4R02HLXLW	CNB_00555610	F096889	LKGTTVAAEEGANPPFGCTMTWLAVIVVPLVVPRTRTLSPFVIALAEVELVPFRYVVEAAFLTVTF
CNB_F6ESG4R02HNQRV	CNB_00346660	F013179	VPNSAIQALEGRANVSFSFGKPRKTELLSGTLGPALGLLFPLSGPFEGRGPTFGVRFRRDTKKAGTLGLQIDYAPLRVRQGCSSDCEPHAIFFAPGYEASYHAMWGRLYGELGVLLAGFPSVGSDRGIAQGAQGGLG
CNB_F6ESG4R02HUH8O	CNB_01030740	F069771	SGLNATLYTSGYVECAYGGFGEGCRKRYDFVPYVDLPDGWFTKGGNSYCSEHWPMVRR
CNB_F6ESG4R02HXT27	CNB_01706900	F105522	MRDRGSCSSSTSNAGLAVVATELEITGNTVVRNSAKRTPPKRGGIVLAGGQDGDRGTLILRDNVIRGNGGPGILKSRLKLVVDSTGNDVSGNESA
CNB_F6ESG4R02JGWU5	CNB_01380320	F101471	MKTLIATATLTIMFLSAGAFAGNGIQMATLAKSQISNVTVIIKNGQWPVKGQTSFDACSVRRCLDA
CNB_F6ESG4R02JHXDV	CNB_02324910	F031179	MDSRERYETVKSRLRVMGEGTAHQVHTSMEPTSYSGREVENTLDEMVLAEQDEFEKAGELYRWKNHYRFRTR
CNB_F6ESG4R02JPP3O	CNB_00916840	F054735	MNKPNTEYWATHLYLSPRERPKPDQPVRDLPQRAAQRFKKAREELRTLRHVTEQVVYLGTTWKWVWMYEVGGRKLG