2044078000: Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL

Overview

Basic Information

• IMG/M Taxon OID: 2044078000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045634 | Gp0051611 | Ga0011086
• Sample Name: Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Illinois, Urbana-Champaign
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43495537
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → unclassified Luteimonas → Luteimonas sp. J16	1
Not Available	8
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Switchgrass, Maize And Miscanthus Rhizosphere → Switchgrass, Maize And Miscanthus Rhizosphere Microbial Communities From University Of Illinois Energy Farm, Urbana, Il

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → rhizosphere → bulk soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: UIUC Energy Farm, Urbana, Illinois 61801
• Coordinates
  • Lat. (^o): 40.109
  • Long. (^o): -88.204
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000580	Metagenome / Metatranscriptome	1010	Y
F001723	Metagenome / Metatranscriptome	646	Y
F002861	Metagenome / Metatranscriptome	525	Y
F003072	Metagenome / Metatranscriptome	509	Y
F006088	Metagenome / Metatranscriptome	382	Y
F008730	Metagenome / Metatranscriptome	329	Y
F012323	Metagenome / Metatranscriptome	281	Y
F013958	Metagenome / Metatranscriptome	267	Y
F018099	Metagenome	237	Y
F019986	Metagenome / Metatranscriptome	226	Y
F024843	Metagenome / Metatranscriptome	204	Y
F038132	Metagenome	166	Y
F050534	Metagenome / Metatranscriptome	145	Y
F067974	Metagenome / Metatranscriptome	125	Y
F070247	Metagenome	123	Y
F071036	Metagenome	122	Y
F084691	Metagenome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
ZMB_F548DK201ATG82	All Organisms → cellular organisms → Bacteria → Acidobacteria	565
ZMB_F548DK201AVK7M	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502
ZMB_F548DK201AZ75Q	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	520
ZMB_F548DK201B1YFM	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Luteimonas → unclassified Luteimonas → Luteimonas sp. J16	521
ZMB_F548DK201BF3XI	Not Available	515
ZMB_F548DK201BR774	Not Available	515
ZMB_F548DK201CWG1Q	Not Available	508
ZMB_F548DK201D4K47	All Organisms → cellular organisms → Bacteria	517
ZMB_F548DK201DEQC1	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512
ZMB_F548DK201EY9I9	Not Available	502
ZMB_F548DK202FPN3H	Not Available	507
ZMB_F548DK202GKBSD	All Organisms → cellular organisms → Bacteria	505
ZMB_F548DK202GVLND	Not Available	509
ZMB_F548DK202IJ2KX	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505
ZMB_F548DK202JRQC0	Not Available	511
ZMB_F5IW0KN15JFTWM	Not Available	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
ZMB_F548DK201ATG82	ZMB_1962870	F003072	LKTKTPRQSVCNIPTDNPKEPYCGGKLKRITELDPDAKKAAGAGKDVFRCQKCKTLYVDESPYAVGKVKA
ZMB_F548DK201AVK7M	ZMB_852180	F002861	MEPNHSGAANFEARTIKDIIEPAKSIFNKVSVKGALDEMQARAIDSSPVIDQRGELLGTVSKNKMNREVGGLGHDPKTESIEAHM
ZMB_F548DK201AZ75Q	ZMB_1890310	F038132	MRIDIPKDKVPRGNRRPEVDDGRTPFVDRAEWMDQEPITKFIKEVLEQRKR
ZMB_F548DK201B1YFM	ZMB_240700	F067974	VRRATLTGRQEFTVLYAFDDDYLEFAADQVVTEAAAYAKRIGASNVGVSGYRATSILSNGDRLVEKAGLAEKRAKNVATLLRGLGVARVVFESKTEPEPGDGQTDPSRRRVTIVVTP
ZMB_F548DK201BF3XI	ZMB_1789300	F006088	DCLRRADDAKQRAAQATEPSIKSAYEKVAEYWMLLARLESLLGDEKNSEDG
ZMB_F548DK201BR774	ZMB_2393650	F008730	MPSKLSEETSRNFNSMAPGLSDEARKAVKAVFDAMSTWCTEIVNN
ZMB_F548DK201CWG1Q	ZMB_2666680	F000580	LTDSEDIANVAGQLADLTHSAEEMASQLETFRLGAETQQERADTQQERIDLAARELAEVSERLQAAAKALRQSI
ZMB_F548DK201D4K47	ZMB_2563770	F070247	MKWHIINNRDYIDGPFETYEEALQEARYLGKETRLEPRISRRSADFYVYRPPYDREEHWQ
ZMB_F548DK201DEQC1	ZMB_1716300	F024843	MPRRRLLTGTLLALGSLAGTIAVRRRFAKRHERVDVYFEDGSMVSISDDSPEAATVLPLAHRIIEAARTA
ZMB_F548DK201DKI47	ZMB_2292850	F050534	VEEVTDEPLYRDRVCGIDIGKAGMAATIRVPSDRDPARRPARPAASRPRT
ZMB_F548DK201EY9I9	ZMB_1789570	F019986	MYSANAYLIRDARVEDVPELVRLGWATAESWPTGQILVGEIRGVVAAALAVDENRSLIATVPGAPSLLAHMHARAAGIRAYRQTPSLADR
ZMB_F548DK202FPN3H	ZMB_1483160	F013958	LAIAFTAYVALGILALLTLEDQRFRFATLAILAMLAVKTWVRRKDFLHSGDEGESE
ZMB_F548DK202GKBSD	ZMB_1227450	F071036	MGKRVVHLEFPAQDLERGKKFWEGVGGWEIKDSACPACST
ZMB_F548DK202GVLND	ZMB_1238950	F018099	MARTYVVDIAGGTATVTVQAQGSQTLKSATWSGVGAAAGKWELSYSATSQIGTAQPDSNVIARISLGVLTSGGTFAVQMPITMPVKAFQSIYVHCTGAGNVGTVTLS
ZMB_F548DK202IJ2KX	ZMB_547670	F012323	MDCFPVACDQLVETGSGWFYVPTGNLFKREQVQPSQDHHCHVCLGRGREHRSICAFIVPN
ZMB_F548DK202JRQC0	ZMB_1460430	F084691	PGNRKNFQNFLYVDNGVEWTKRGEDGGAGNAVDGHAAGTGAPVWEDSSRMKVRRIIYQDPASFRTVDPIFYTSAAYNAVALGDIVAVLVPGSATAINYVAIKKQPERQPSRGTARQLID
ZMB_F5IW0KN15JFTWM	ZMB_393970	F001723	PEIWDTPGLTLVLSWLVQKWQQKCRKLAPRGGNKNAVQYLTKEQQKACLDSAAAELIREIRQQRPLN