2040502003: 80 m water depth

Overview

Basic Information

• IMG/M Taxon OID: 2040502003
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045617 | Gp0051644 | Ga0011151
• Sample Name: 80 m water depth
• Sequencing Status: Permanent Draft
• Sequencing Center: Soedertoern University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 97114545
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	9
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Landsort Deep, Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Landsort Deep, Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Sweden
• Coordinates
  • Lat. (^o): 58.58333333
  • Long. (^o): 18.23333333
  • Alt. (m): N/A
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018545	Metagenome / Metatranscriptome	234	Y
F028742	Metagenome	190	Y
F029409	Metagenome	188	Y
F038426	Metagenome / Metatranscriptome	166	Y
F057923	Metagenome / Metatranscriptome	135	N
F071012	Metagenome / Metatranscriptome	122	Y
F071404	Metagenome	122	N
F085723	Metagenome	111	N
F093413	Metagenome	106	Y
F097486	Metagenome / Metatranscriptome	104	Y
F102126	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
LanddsortDeep80_GCH9ZVC01B2T7X	All Organisms → cellular organisms → Bacteria	531
LanddsortDeep80_GCH9ZVC01BE8PQ	Not Available	523
LanddsortDeep80_GCH9ZVC01CZSDJ	Not Available	508
LanddsortDeep80_GCH9ZVC01DVHEU	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	528
LanddsortDeep80_GCH9ZVC01DX074	Not Available	506
LanddsortDeep80_GCH9ZVC01EAGTX	Not Available	543
LanddsortDeep80_GCH9ZVC01EICHI	Not Available	515
LanddsortDeep80_GCH9ZVC02F606W	Not Available	505
LanddsortDeep80_GCH9ZVC02GFKY7	Not Available	506
LanddsortDeep80_GCH9ZVC02HNE8Z	Not Available	505
LanddsortDeep80_GCH9ZVC02JX2CT	Not Available	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
LanddsortDeep80_GCH9ZVC01B2T7X	80m_1238650	F071404	MFSPFFTNKKKIIKQLLDMIEYLIADNNRLRQKIERIEHRQGLRFGGT
LanddsortDeep80_GCH9ZVC01BE8PQ	80m_1504930	F085723	MLTKIKFKTLHHTLNAMQLQAAYQLSEIDGWHIEG
LanddsortDeep80_GCH9ZVC01CZSDJ	80m_3810110	F029409	MKKFVIDDLYMIHSGKWIFIRFNPDSNVSKVDIDDKLDKLINTMEECIGRIEQEANTELVEIIKLYC
LanddsortDeep80_GCH9ZVC01DVHEU	80m_2365620	F018545	DQFLWKQESGSASTFGGTCEAGGLNFIITGSTAGVVVPAGSGSQAITSTTALAVMDDMIANLSSDVADRDDITFFMSVQNFRNYVTALRNANNFYFDPSSITNRGGILEMAYPFQPGIKVVGTVGLQGTARVVLGPAKQIVVGTDLLSDFSEFQLWYDINTDTLRHRISTKLGVN
LanddsortDeep80_GCH9ZVC01DX074	80m_329120	F093413	MKHGYYADRELPESIGINKPPLVDYKTNSHGYRCPEWEPMPDGKKNVVVLGCSHTFGQGNTGQRTLGTSSITTQHN
LanddsortDeep80_GCH9ZVC01EAGTX	80m_1358820	F028742	MEITNRTSAGLCEALFQEFDLLRAGMSDHHRAAAVAKLAVQIINTKRLEIDAAVFDKSGLKFSPLNLTTQGVRIGLPI
LanddsortDeep80_GCH9ZVC01EICHI	80m_1448320	F102126	MGNKGKDVQLGKDAERFVNDPLYKTAFAETKEELIKMLLQTKISEETERDRIYITIKALGLIDEHIQSVINTGKLA
LanddsortDeep80_GCH9ZVC02F606W	80m_864250	F038426	MKFDIDWDTIDAIGIEFVKESYAGLLETFSGYDPENADHKEDFYDDEWRVECFETVLKYILPKGEAHAFIAGQRQKHLSQIDLFN
LanddsortDeep80_GCH9ZVC02GFKY7	80m_1009860	F057923	MTQEEFDNHPAWKDANYEGAERTMLQNGMRMTLIEKLRWLEEAETFSLQFPINRRRAIAEGRLPPEADSF
LanddsortDeep80_GCH9ZVC02HNE8Z	80m_1620340	F097486	LLKVAEKAIKENKGIGEDSILASKMASNIDHYRMCPFRSLDVDECPLCKLSNI
LanddsortDeep80_GCH9ZVC02JX2CT	80m_1843020	F071012	LLLLTKFSYSQTVLIDNNTGDTLVTITLPQMDKIYVELLQKDSLYEQAILSHSKELLLYEAIDSAKNDIKSLEMLVYTIDEDNIALRLDNEYKDYQLKTSKTMSVVAIIALFLFAAL