NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS019126_WUGC_scaffold_42151

Scaffold SRS019126_WUGC_scaffold_42151


Overview

Basic Information
Taxon OID7000000523 Open in IMG/M
Scaffold IDSRS019126_WUGC_scaffold_42151 Open in IMG/M
Source Dataset NameHuman palatine tonsils microbial communities from NIH, USA - visit 2, subject 763496533
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39231
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (88.89%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Palatine Tonsils → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073671Metagenome120N

Sequences

Protein IDFamilyRBSSequence
SRS019126_WUGC_scaffold_42151__gene_65113F073671AGGMNKEQAEHELAELHEKEQSLEKALELVREKIRELVNYTDKNKEQK

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