Scaffold Ga0310143

Basic Information
Taxon OID	3300034523 Open in IMG/M
Scaffold ID	Ga0310143_00917 Open in IMG/M
Source Dataset Name	Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034523 Open in IMG/M

Scaffold ID

Ga0310143_00917 Open in IMG/M

Source Dataset Name

Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11783
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (66.67%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

11783

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (66.67%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Oklahoma
Coordinates	Lat. (^o)	35.812	Long. (^o)	-98.262	Alt. (m)	Depth (m)	2943
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oklahoma

Coordinates

Lat. (^o)

35.812

Long. (^o)

-98.262

Alt. (m)

Depth (m)

2943

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F005531	Metagenome / Metatranscriptome	397	Y
F006744	Metagenome / Metatranscriptome	365	Y
F008132	Metagenome / Metatranscriptome	338	Y
F015988	Metagenome / Metatranscriptome	250	Y
F038643	Metagenome / Metatranscriptome	165	Y
F042747	Metagenome / Metatranscriptome	157	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310143_00917_1146_1337	F015988	N/A	MKLHLISLEQDLENISQEMEELDPESKACKELDYEYNYVSGQSTATRHLLSVANDILVETKEA
Ga0310143_00917_1342_1509	F042747	AGGAG	MLGYTYQDIQEFGGALNWALHYIPESNTEAKQGILEIWNFFEGLLAEGYVDEPVN
Ga0310143_00917_1509_1787	F000868	GAGG	MSDPHGIIGIYRKGGSMSFLENENQMVIDAIYQEIGEQLVEDWVQSNLDEGQMYADYRFAEMSNDNYIKGRFNQFYDLNPNDQYYLEWDEEK
Ga0310143_00917_7596_7895	F038643	N/A	VGYAIISAYNKRKVKNMSDFTNWKSYPFTVDGVEFVSLLNPEGTMYQQVQTMPTQVFTMMNQSAIRELIGKVSLMSKPEIQAELDRVNEGYGQAYLALA
Ga0310143_00917_8661_8777	F006744	AGG	MNLEEFKAHVLATRQASKSEALSVLSATISNNNERKEN
Ga0310143_00917_9491_9673	F008132	GAGG	MMTKWDTIQEDIKDQYAHLDDYEDLEVEEDEDIFGFSKAIEIDHLTDDEVEEIFNMFGDK
Ga0310143_00917_9673_9828	F005531	AGGA	MKITYSLWQGSQLLSTGNTANKPEEILAVMEELNKLGKGFSFIVREVEVNN
Ga0310143_00917_9992_10111	F085710	AGGA	MDYNDYYDDIYLDIYLEFGADSVTDPTYAEQLAKEKGVR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310143_00917

Overview

Ecosystem & Geography

Associated Families

Sequences