Scaffold Ga0335061_0020810

Overview

Basic Information

• Taxon OID: 3300034168
• Scaffold ID: Ga0335061_0020810
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3483
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005531	Metagenome / Metatranscriptome	397	Y
F063685	Metagenome / Metatranscriptome	129	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335061_0020810_2155_2280	F085708	AGAAG	MTTNRILTTLVQLAIGIPALYMARLMWREVLADFREWDKSH
Ga0335061_0020810_2280_2417	F063685	GAGG	MKIELDNYGFMLETEWCYVALSWQLLITTALLVTAYKIYKRKKNK
Ga0335061_0020810_2417_2572	F005531	AGGAG	MTITYSLWQGSQLLSVNNKASNSEEILAVIAELNKLGKGFSFIVREVEVSK