Scaffold Ga0334964_000024

Overview

Basic Information

• Taxon OID: 3300034146
• Scaffold ID: Ga0334964_000024
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 60SNS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 158061
• Total Scaffold Genes: 156
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (51.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010196	Metagenome / Metatranscriptome	307	Y
F081525	Metagenome	114	Y
F084700	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334964_000024_14657_14899	F010196	N/A	VTGVRLVVGVIVMGILVPVTLFLLLRLQTLSQLFTIAVTTFLTWGVADMLANLLSRPRLKDRSPGKAIREDLERRSKELE
Ga0334964_000024_53777_53998	F084700	AGG	VKYQALEFDAMTAVHLPMSERVLDKLADILFATDEILDMLQMEEQLPSPASSVEESVRSVYDQVNELMKQLAD
Ga0334964_000024_88664_89074	F081525	GGAG	MIKATRLALVLSFAVLVADAASAACVNRFVARTERGRPHQILTLLTGKLTFQEAQALAKAIQAKSAPPLEIVDARGKVVARQFGELKVVRPMPVGCDGKTSGVVIVATFPLVTVPSGKTLVKLDANTTVEFEEQKD