Scaffold Ga0335036_0001789

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0001789
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19015
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (70.59%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011143	Metagenome / Metatranscriptome	294	Y
F020143	Metagenome	225	N
F024787	Metagenome	204	N
F026865	Metagenome / Metatranscriptome	196	N
F027846	Metagenome / Metatranscriptome	193	N
F036148	Metagenome	170	N
F081333	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0001789_10707_11381	F020143	AGGCGG	MIKPRYSELPGRYRSLAAVPSIYVENLDFLIAKMKKIDPDLQKEFRRELGKAVKPVAKLAQSFVPHSPFPGWRDVEPNYPPQWGWANDQQHRGRTIGENKRSRWKWSQTEVIRGIRVSTAKSKVQRIKGITYGVTALAIVNKSVPGIIYELAGFGSSKSRGKTRRVSRNPNASESFIGKLQGTANSGAYKEKRLIYRASQQLGGQVNDNLYGVLKKYLGKEFRG
Ga0335036_0001789_11381_11503	F026865	N/A	VATGISPKDLLEVDPAIYAAIKAILQERTLNSKKATVRRK
Ga0335036_0001789_11542_11799	F011143	AGGTGG	MHKIEIVKKDGKKLTYDLTPSAKVAFESEFKTGWRKRLGELQMESDLWWFAWRLEKDAGKTEMLFGDEYINQYTDVDLVYDPKNG
Ga0335036_0001789_16922_17068	F081333	AGGAG	MKYLPSVIQVIGSFLIVASVATINPLIAVILLGAFLVLFGIALENRGK
Ga0335036_0001789_2763_3026	F036148	AGG	MATHKPRKVTRRKRRTPRKADALNKLENHYITLNEMYRAAKSAGFSSDVAFWLITEPGSSLPDWVNPNTKPHEVIPRIDPTEDEDED
Ga0335036_0001789_456_734	F024787	AGGA	MNYEVMGWLVTISLLALVALLIGVTWIVAVENGYDKGFKSGYKRGFADTKQSFARTGKFVVSNHPALRTRQLQADNDYLMEKVVSLWDKENK
Ga0335036_0001789_724_921	F027846	N/A	LELVKYDKQSGAYVDEKRKHFVKASVIRQHAKKAIGARQVRGRLSAKMVEAYWLDKFKEAVKYEL