Scaffold Ga0335031_0053729

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0053729
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2899
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Elizabethkingia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024535	Metagenome	205	Y
F037637	Metagenome	167	Y
F104496	Metagenome	100	N
F105026	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0053729_1562_1831	F037637	N/A	MNWQIKKKRVKQVIVTFEWTEKSDLKLILDDLKDLIASGVESYHGEKKSVEIEDKYHLIEFSQKYLDSIHESIEREINGELKLVIKSKI
Ga0335031_0053729_1828_1986	F105026	N/A	MKAKDNTYYPHRPNIVYLVRKWKTKICAEDKGGSFNEKLYRDYLDAIINYTK
Ga0335031_0053729_1970_2116	F104496	N/A	MKKRTGILINSIIILLGYTYDSYLMLGAGVICLSLVLISKTKRHESKR
Ga0335031_0053729_2461_2745	F024535	N/A	MAKKVIDIDTKNVDINLEKDGTNVNLNVDSKNLDISYVKDEINKEFKLVGKNIDVDIKKTAGGVEVKVDSKGGIYGWIAKRIIKFILKRFKLGK