NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105026

Metagenome Family F105026

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105026
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 55 residues
Representative Sequence MKSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Number of Associated Samples 65
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 18.00 %
% of genes from short scaffolds (< 2000 bps) 67.00 %
Associated GOLD sequencing projects 60
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (64.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(19.000 % of family members)
Environment Ontology (ENVO) Unclassified
(48.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(42.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62
1NpDRAFT_105206482
2JGI24766J26685_100245835
3JGI24766J26685_100424896
4B570J40625_1009102832
5Ga0068876_100005579
6Ga0068876_100017316
7Ga0079957_10022398
8Ga0079957_11234133
9Ga0075471_100678101
10Ga0070749_106634043
11Ga0099848_12050941
12Ga0102866_12107811
13Ga0105746_12904732
14Ga0114340_10107687
15Ga0114340_10418144
16Ga0114351_100204434
17Ga0114355_100242911
18Ga0114363_10219382
19Ga0114363_10786342
20Ga0114363_11341787
21Ga0114878_12233181
22Ga0114876_11189661
23Ga0114876_11642992
24Ga0114880_10196528
25Ga0114880_10668651
26Ga0114880_11243791
27Ga0114880_12133351
28Ga0102831_12246661
29Ga0105098_106850751
30Ga0105103_100669547
31Ga0105103_104648722
32Ga0105103_105345742
33Ga0105102_1000688410
34Ga0105102_104634063
35Ga0105097_104898293
36Ga0105097_108485232
37Ga0129333_1003510110
38Ga0129333_103855295
39Ga0129333_116519161
40Ga0153805_10183055
41Ga0164293_103800992
42Ga0164293_104359923
43Ga0164292_108122392
44Ga0181363_10194503
45Ga0211729_114668792
46Ga0208051_1021404
47Ga0208050_10176393
48Ga0208590_10226543
49Ga0208593_10067825
50Ga0207942_10461242
51Ga0214163_10456414
52Ga0222714_100907894
53Ga0222712_1001120312
54Ga0181353_10332522
55Ga0181353_10635843
56Ga0208975_10450943
57Ga0209704_10003213
58Ga0209704_12513462
59Ga0209972_100284595
60Ga0209972_100588725
61Ga0209229_100277862
62Ga0209229_101209641
63Ga0209229_102102401
64Ga0209990_105101601
65Ga0209820_100220613
66Ga0209820_10690233
67Ga0209079_100281686
68Ga0119944_10015003
69Ga0119945_10089082
70Ga0315907_100696628
71Ga0315907_112156322
72Ga0315908_104841084
73Ga0315900_102959352
74Ga0315900_106796783
75Ga0315909_1003075112
76Ga0315909_102737663
77Ga0315904_100942708
78Ga0315901_105771743
79Ga0315906_104796335
80Ga0315902_101223842
81Ga0315903_100375982
82Ga0315903_102450957
83Ga0315903_105249214
84Ga0315903_109018524
85Ga0334980_0036928_1447_1611
86Ga0334982_0014612_640_810
87Ga0334996_0137781_979_1149
88Ga0334996_0360481_103_273
89Ga0334979_0322529_2_148
90Ga0334998_0048007_558_728
91Ga0334987_0014861_97_267
92Ga0334987_0021286_2909_3079
93Ga0334987_0052650_2773_2937
94Ga0334987_0569191_370_540
95Ga0334987_0723246_267_437
96Ga0335030_0201043_277_447
97Ga0335031_0000498_1541_1711
98Ga0335031_0053729_1828_1986
99Ga0335036_0035616_2017_2187
100Ga0335048_0088186_407_577
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 55.36%    β-sheet: 0.00%    Coil/Unstructured: 44.64%
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Position

Original

Variant

510152025303540455055MKSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTKSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
36.0%64.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater And Sediment
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater
Lake
Aquatic
Freshwater
Surface Ice
Aqueous
Freshwater To Marine Saline Gradient
Estuary Water
Estuarine
Estuarine Water
Freshwater And Marine
13.0%7.0%8.0%5.0%19.0%7.0%7.0%15.0%3.0%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
NpDRAFT_1052064823300000929Freshwater And MarineMKSKIKNVVNTYFPHRPNVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK*
JGI24766J26685_1002458353300002161Freshwater And SedimentMNSKIKNVVNTYFPHXPNXTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK*
JGI24766J26685_1004248963300002161Freshwater And SedimentNSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAILNFTK*
B570J40625_10091028323300002835FreshwaterMNSKIKNVVNTYFPHKPNITYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0068876_1000055793300005527Freshwater LakeMKAKDNTYYPHRPNVEYLKRKWMNKICPEDKGGSFNEKLYKDYLDAIINYTK*
Ga0068876_1000173163300005527Freshwater LakeMNSKIKNVVNTYFPHRPNVTYLKRKWETKICPEDKGGSFNEKLYRDYLDAIINYTK*
Ga0079957_100223983300005805LakeMNSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0079957_112341333300005805LakeMKSTKHENVYYPHRPNITYLKRKWKTKICAEDKGGSFNEKLYLDYLEAISNPTK*
Ga0075471_1006781013300006641AqueousMSKIKKVINTYFPNKPNISYLKRKWEKKICPEDKGGSFNEKLYNDYLDAILNPTK*
Ga0070749_1066340433300006802AqueousMNSKIKNVVNTYFPYRPNVKYLSRKWKTKICPEDKGGSFNEKLYNDYLDAIINFTK*
Ga0099848_120509413300007541AqueousMNSKIKNVVNTYFPYRPNVTYLSRKWKTKICPEDKGGSFNEKLYNDYLDAIINFTK*
Ga0102866_121078113300007661EstuarineNVVNTYFPHRPNVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0105746_129047323300007973Estuary WaterMSKDKKENVYYPNRPNIVYLKRKWESKICAEDKGGSFNEKLYNDYLNAIINLIK*
Ga0114340_101076873300008107Freshwater, PlanktonMKQKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0114340_104181443300008107Freshwater, PlanktonMKRKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYNDYLDAILNYTK*
Ga0114351_1002044343300008117Freshwater, PlanktonMKSTKHENVYYPHRPNITYLKRKWKTKICPEDKGGSFNEKLYLDYLEAILNPTK*
Ga0114355_1002429113300008120Freshwater, PlanktonMKSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0114363_102193823300008266Freshwater, PlanktonMKSQIKNAVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINFTK*
Ga0114363_107863423300008266Freshwater, PlanktonMNSKIKNVVNTYFPHRPNITYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNYTK*
Ga0114363_113417873300008266Freshwater, PlanktonMKSQIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0114878_122331813300008339Freshwater LakeMKSQIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYL
Ga0114876_111896613300008448Freshwater LakeKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNYTK*
Ga0114876_116429923300008448Freshwater LakeMKAKDNTYYPHRPNIVYLKRKWETKICPEDKGGSFNEKLYRDYLDAIINYTK*
Ga0114880_101965283300008450Freshwater LakeMKSQIKNAVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNFTK*
Ga0114880_106686513300008450Freshwater LakeKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYNDYLDAILNYTK*
Ga0114880_112437913300008450Freshwater LakeMKRKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYLDYLDAIINYTK*
Ga0114880_121333513300008450Freshwater LakeLKNMKRKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0102831_122466613300008996EstuarineLKLKEMKSKIKNVVNTYFPHRPNVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0105098_1068507513300009081Freshwater SedimentIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNFTK*
Ga0105103_1006695473300009085Freshwater SedimentMKPQIKNAVNTYFPHRPNVVYLKRKWKTKICPEDKGGSFNEKLYNDYLDAILNFTK*
Ga0105103_1046487223300009085Freshwater SedimentMKRKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNYTK*
Ga0105103_1053457423300009085Freshwater SedimentMKSKIKNAVNTYFPHRPNVKYLSRKWKTKICPEDKGGSFNEKLYNDYLDAILNFTK*
Ga0105102_10006884103300009165Freshwater SedimentMKRKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0105102_1046340633300009165Freshwater SedimentMKSKIKNAVNTYFPHRPNVKYLSRKWKTKICPEDKGGSFNEKSYNDYIDAIL
Ga0105097_1048982933300009169Freshwater SedimentNTYFPHRPNVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0105097_1084852323300009169Freshwater SedimentMKSKIKNAVNTYFPHRPNVVYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNFTK*
Ga0129333_10035101103300010354Freshwater To Marine Saline GradientMKSKIKNAVNTYFPHRPNVVYLSRKWKTKICPEDKGGSFNEKLYLDYLDAILNFTK*
Ga0129333_1038552953300010354Freshwater To Marine Saline GradientMNSKIKNVVNSYFPYRPNVKYLSRKWKTKICPEDKGGSFNEKLYNDYLDAIINYIK*
Ga0129333_1165191613300010354Freshwater To Marine Saline GradientMKSKIKNVVNSYFPNRPNVVYLSRKWKTKICPEDKGGSFNEKLYNDYLDAILNFTK*
Ga0153805_101830553300012013Surface IceVNTYFPHRPNVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0164293_1038009923300013004FreshwaterMKSKIKNMVNTYFPHRPNVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0164293_1043599233300013004FreshwaterMKPQIKNAVNTYFPHRPNVVYLSRKWKTKICPEDKGGSFNEKLYLDYLDAILNFTK*
Ga0164292_1081223923300013005FreshwaterMNSKIKNMVNTYFPHRPNVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK*
Ga0181363_101945033300017707Freshwater LakeMNSKIKNVVNTYFPHRPNITYLKRKWMNKICPEDKGGSFNEKLYNDYLDAILNYTK
Ga0211729_1146687923300020172FreshwaterMKRKNNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNYTK
Ga0208051_10214043300020488FreshwaterMKRKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNFTK
Ga0208050_101763933300020498FreshwaterMSKSKKENTYYPYRPNIIYLKRKWETKICAEDKGGSFNEKLYNDYLDAILNYTK
Ga0208590_102265433300020501FreshwaterKNVVNTYFPHRPNVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0208593_100678253300020511FreshwaterMKSKIKNAVNTYFPHRPNVVYLSRKWKTKICPEDKGGSFNEKLYLDYLDAILNFTK
Ga0207942_104612423300020549FreshwaterMNSKIKNVVNTYFPHKPNITYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0214163_104564143300021141FreshwaterMKLKIKNVVNTYFPHRPNVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0222714_1009078943300021961Estuarine WaterMQSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0222712_10011203123300021963Estuarine WaterMQSKIKNVVNTYFPHRPNITYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0181353_103325223300022179Freshwater LakeMNSKIKNVVNTYFPHRPNITYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNFTK
Ga0181353_106358433300022179Freshwater LakeMKSQIKNAVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0208975_104509433300027659Freshwater LenticMKSQIKNVVNTYFPHRPNVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0209704_100032133300027693Freshwater SedimentMKRKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0209704_125134623300027693Freshwater SedimentMKSKIKNVVNTYFPHRPNVVYLSRKWKTKICPEDKGGSFNEKLYLDYLDAILNFTK
Ga0209972_1002845953300027793Freshwater LakeMKAKDNTYYPHRPNVEYLKRKWMNKICPEDKGGSFNEKLYKDYLDAIINYTK
Ga0209972_1005887253300027793Freshwater LakeMNSKIKNVVNTYFPHRPNVTYLKRKWETKICPEDKGGSFNEKLYRDYLDAIINYTK
Ga0209229_1002778623300027805Freshwater And SedimentMNSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAILNFTK
Ga0209229_1012096413300027805Freshwater And SedimentMNSKIKNVVNTYFPHRPNVAYLKRKWITKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0209229_1021024013300027805Freshwater And SedimentMKSTKHENVYYPHRPNITYLKRKWKTKICAEDKGGSFNEKLYNDYLDAIINYTK
Ga0209990_1051016013300027816Freshwater LakeMKRKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNYTK
Ga0209820_1002206133300027956Freshwater SedimentMKSKIKNVVNTYFPHRPNVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0209820_106902333300027956Freshwater SedimentMKPQIKNAVNTYFPHRPNVVYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNFTK
Ga0209079_1002816863300027972Freshwater SedimentMKSKIKNAVNTYFPHRPNVKYLSRKWKTKICPEDKGGSFNEKLYNDYLDAILNFTK
Ga0119944_100150033300029930AquaticMKSTKHENVYYPHRPNITYLKRKWKTKICAEDKGGSFNEKLYLDYLEAISNPIK
Ga0119945_100890823300029933AquaticMKAKDNTYYPHRPNIVYLIRKWKTKICAEDKGGSFNEKLYLDYLEAISNPTK
Ga0315907_1006966283300031758FreshwaterMKRKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYNDYLDAILNYTK
Ga0315907_1121563223300031758FreshwaterMKSTKHENVYYPHRPNITYLKRKWKTKICPEDKGGSFNEKLYLDYLEAILNPTK
Ga0315908_1048410843300031786FreshwaterVVNTYFPHRPNVTYLKRKWETKICPEDKGGSFNEKLYRDYLDAIINYTK
Ga0315900_1029593523300031787FreshwaterMNSKIKNVVNTYFPHRPNITYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNYTK
Ga0315900_1067967833300031787FreshwaterMKQKTNLVNTYFPFRPNVEYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0315909_10030751123300031857FreshwaterMKSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYT
Ga0315909_1027376633300031857FreshwaterMKSTKQENVYYPHRPNITYLKRKWKTKICPEDKGGSFNEKLYLDYLEAISNPTK
Ga0315904_1009427083300031951FreshwaterMKSTKHENVYYPHRPNITYLKRKWKTKICAEDKGGSFNEKLYLDYLEAISNPTK
Ga0315901_1057717433300031963FreshwaterMKSQIKNAVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINFTK
Ga0315906_1047963353300032050FreshwaterKLKEMKSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0315902_1012238423300032093FreshwaterMKSQIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0315903_1003759823300032116FreshwaterMKSTKQENVYYPHRPNITYLKRKWKTKICAEDKGGSFNEKLYLDYLEAISNPTK
Ga0315903_1024509573300032116FreshwaterLKDMNSKIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0315903_1052492143300032116FreshwaterMKSTKHENVYYPHRPNITYLKRKWKTKICPEDKGGSFNEKLYLDYLEAISNPTK
Ga0315903_1090185243300032116FreshwaterSLKLKNMKSTKHENVYYPHRPNITYLKRKWKTKICAEDKGGSFNEKLYLDYLEAISNPTK
Ga0334980_0036928_1447_16113300033816FreshwaterMKSTKHENVYYPHRPNITYLKRKWKTKICPEDKGGSFNEKLYNDYLDAISNPTK
Ga0334982_0014612_640_8103300033981FreshwaterMKSQIKNVVNTYFPHRPNVTYLKRKWITKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0334996_0137781_979_11493300033994FreshwaterMKSKIKNVVNTYFPHRPNITYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0334996_0360481_103_2733300033994FreshwaterMKSKIKNVVNTYFPHRPNVAYLKRKWITKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0334979_0322529_2_1483300033996FreshwaterVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0334998_0048007_558_7283300034019FreshwaterMNSKIKNVVNTYFPHKPNITYLKRKWMNKICPEDKGGSFNEKLYNDYLDAILNYTK
Ga0334987_0014861_97_2673300034061FreshwaterMKSKIKNVVNTYFPHRPNVTYLKRKWITKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0334987_0021286_2909_30793300034061FreshwaterMKPQIKNVVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0334987_0052650_2773_29373300034061FreshwaterMKSTKHENVYYPHRPNITYLKRKWKTKICPEDKGGSFNEKLYEDYLDAIINYTK
Ga0334987_0569191_370_5403300034061FreshwaterMKSKIKNAVNTYFPHRPNVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0334987_0723246_267_4373300034061FreshwaterMKTKIKQAVNTYFPNKPNLTYLKRKWQNKICPEDKGGSFNEKLYQDYLDAILNYTK
Ga0335030_0201043_277_4473300034103FreshwaterMKTKIKEAVNTYFPNKPNLTYLKRKWQNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0335031_0000498_1541_17113300034104FreshwaterMKSQIKNAVNTYFPHRPNVTYLKRKWMNKICPEDKGGSFNEKLYLDYLDAILNFTK
Ga0335031_0053729_1828_19863300034104FreshwaterMKAKDNTYYPHRPNIVYLVRKWKTKICAEDKGGSFNEKLYRDYLDAIINYTK
Ga0335036_0035616_2017_21873300034106FreshwaterMNSKIKNVVNTYFPHRPKVAYLKRKWVTKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0335048_0088186_407_5773300034356FreshwaterMKSQIKNAVNTYFPHRPNVVYLSRKWKTKICPEDKGGSFNEKLYLDYLDAILNFTK


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