Scaffold Ga0335031_0001534

Overview

Basic Information

• Taxon OID: 3300034104
• Scaffold ID: Ga0335031_0001534
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17447
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (66.04%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F008496	Metagenome / Metatranscriptome	332	Y
F027180	Metagenome / Metatranscriptome	195	Y
F061858	Metagenome	131	Y
F072347	Metagenome	121	Y
F082675	Metagenome / Metatranscriptome	113	N
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335031_0001534_11370_11519	F027180	GGAG	MAIKLFNKKPKVREVILDSDVIFTKLDKLMGEMASIDIYLEYLELREGM
Ga0335031_0001534_13510_13662	F061858	N/A	MKFVHNKIDGTFVIGISFSNYFSKNLGRKNTSLIFDLGKHSFAFVMRGEY
Ga0335031_0001534_4736_4987	F072347	AGGA	MDNRTKAEILVQFTQDYFNSEEYDEFFDYNDLGIPMSIAITQDMVILTDSGEELLEETWKELCLLFEADPNGEYESIDDLTVN
Ga0335031_0001534_5863_6300	F007525	AGG	MKTLEGVTVEYTQTIPTSKQMPEFYVWQEGAESYATITYLDRLVEVERCGEMHLTLPELVNGELSDEGATIVRYSDDLEAEGINDDIQLLQFIKTISNSGFEIYRMNPWWELFAHNEDMGGIYDTFYEAIDAGIDYITDDSNWEN
Ga0335031_0001534_6310_6537	F082675	AGGAG	MSNQYHWVVVYDEDWGAFMVDAEGELLDRDRLLYNKQSGKWEYLEEDTEQEAEYYRLEEILAYNLTRLDIPKKVG
Ga0335031_0001534_6667_6849	F093864	GGAG	MYNYNVEFVLEAMVMITSVSFDEPDLSDEFIIEQARQNIISYYKIDPEVLHLQDVIVHEV
Ga0335031_0001534_8913_9401	F008496	AGGAG	VDYPIPASVTPMSEQVAVTPAYDPKATILVRKGYYYGTPSDSKFDLENADDISRTYWRLDALQETNNRNSRAQDKLKDYLVENFDEIGEEHATEIANIFGIDLSKEVEVEFNVTIKATVSIPVNEDASDLSVYDFDITIESNESKYEIQEFDADIDSIDERY