Scaffold Ga0335029

Basic Information
Taxon OID	3300034102 Open in IMG/M
Scaffold ID	Ga0335029_0003593 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034102 Open in IMG/M

Scaffold ID

Ga0335029_0003593 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12336
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (35.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

12336

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (35.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006262	Metagenome / Metatranscriptome	377	Y
F010611	Metagenome / Metatranscriptome	301	N
F044973	Metagenome	153	N
F088293	Metagenome	109	Y
F103227	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0003593_11139_11339	F103227	GGAGG	MKDSFAFIYVHKTNGAIRVESLDTARRVDNRPEWKHVSTVNPHVCLENILTASTRQRTQYIKDLLK
Ga0335029_0003593_11336_11494	F088293	N/A	LDLPAFADYNDRRQLRAIALDVRKLEDRVKQLEQENDAMRADLLLWRNTEAK
Ga0335029_0003593_2493_2915	F006262	GGA	VKIRPEVFTFTVAIKRAYLRSVYATLGGVTLLAALAAKSIAAATVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLVDDYDLAVYYLEQDGNLTPTDAQIYTKMVTVVLVAATSFGGDFSNFRREASYRGMS
Ga0335029_0003593_4784_5413	F010611	AGGA	MTQKEYGDRIGISQPRVAQLISQGMPMDSPESADLWRSQHVRSRAKSIPKQKNVPDPTAIEQEGPYRPIEAETPLNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVITQAEKERRLVSGDWVRRVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVALKTLHNTDPWKT
Ga0335029_0003593_5718_6089	F044973	N/A	MKIPYDLDRVKLLHEAPNLVALAIKRGWMSYPRSVKLSAIGTPILVLEEEEDYEITATAQDADVCRKAYDLRERNLSLDDVAKACGVARGSVAYIIAKGHEMYLRQQRIEHSTIDTSVKPANM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335029_0003593

Overview

Ecosystem & Geography

Associated Families

Sequences