Scaffold Ga0335029_0003158

Overview

Basic Information

• Taxon OID: 3300034102
• Scaffold ID: Ga0335029_0003158
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13083
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (84.62%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000714	Metagenome / Metatranscriptome	924	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002245	Metagenome / Metatranscriptome	578	Y
F009530	Metagenome / Metatranscriptome	316	Y
F020168	Metagenome / Metatranscriptome	225	Y
F038246	Metagenome	166	Y
F045755	Metagenome / Metatranscriptome	152	N
F050376	Metagenome / Metatranscriptome	145	Y
F084239	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335029_0003158_10517_10714	F084239	GGAGG	MTKSSYFLEYMKLHEISLMQDLEKIDYVNEHHFYRCKEAEIYNTRHLLSVATDIMNSSNERYNNE
Ga0335029_0003158_10707_10979	F000263	AGG	MNNEDIGLPPHLQKLVNAGVSGLDILHGELKNLMLIAEQELADAQAIEDETEEAMDSMDRTRCEGTLDTLVSLYDLTYQLSFAIGARNVN
Ga0335029_0003158_11315_11461	F000441	AGGAGG	MKMSDEYINDQLNRAQQLLWGGSETENIEAHNIIAKLIKDRVEQINLI
Ga0335029_0003158_1150_1278	F050376	AGAAGG	MNLDEFKAQVEAQRKESLLKAIATMSEASATMGSLFNTKEAN
Ga0335029_0003158_1278_1400	F000447	AGGAGG	MGYVEIFRLDNEGAGWVDLSEATPDELLNIEIGLLNEGAL
Ga0335029_0003158_12911_13078	F038246	N/A	MGILDNLEAYMDKAEEPEKCHYCKAIATYNDIAEVDRNYKIVGVCECHAYKGLVS
Ga0335029_0003158_2313_2441	F045755	AGGAG	MSEIAGMWICDNCDTLAIVSVATDTIVIQQCECVTNERETNV
Ga0335029_0003158_4039_4182	F020168	GAG	MTDIVGSLIAIILILFLCSPIVLAMYMWNSAKIDIDKDGKEDLPNRW
Ga0335029_0003158_4386_4598	F002245	N/A	MKVPHTIEFEAIIDLDKIPASLLPRLLTMDTSLIAEMCKGATAHALAMSNTLTVANDNNTWAELTIKENN
Ga0335029_0003158_556_726	F009530	GGAG	MTITYSIWQGGRLLSIDNVATNVKEIDTLINTLNDSDLGKKTKFSANVMSLKVGNK
Ga0335029_0003158_7616_8122	F000714	GAG	VEHATIAPSTLTKEEKMEEVSMNNLPLSDAEKYNPDLLVTYKVIRGYSDPEFATSKVTSLEWDLHNARQAQKQNGVLQDKINNAKDIIAEAYPDSGDQDTLRSIAEALGIELTRTVEWTATIEVSGTIELDLLEDYDIEDEITDNLYVESQSGRIEIGDQEVCHVREC
Ga0335029_0003158_8122_8334	F000311	GGAG	MYFELTAPDRLSMERAYWDAEMTGLDPQRIAPLTFNIGTGSIEKVSRIRDKYNLVESYTSDYEPTGYTGR
Ga0335029_0003158_8669_9043	F001125	AGGCGG	MGDRANFGFKDRKGDTVFLYGHWAGHRMLENLANAVEAARPRWNDESYATRIAISHMVGDEWTSETGWGISVNQLADNEHKVPIINWKEQTFTLMEEDLQTIVFESSLDSFVNKYSQLEEPVMV