NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335020_0000032

Scaffold Ga0335020_0000032


Overview

Basic Information
Taxon OID3300034082 Open in IMG/M
Scaffold IDGa0335020_0000032 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)111384
Total Scaffold Genes161 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)112 (69.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F009885Metagenome / Metatranscriptome311Y
F017301Metagenome / Metatranscriptome241Y
F021109Metagenome220Y
F029106Metagenome189Y
F030765Metagenome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0335020_0000032_23958_24077F030765GGAGMNESEFDQEFSVEDITNAIVNQAKAEVKSKFGNKKRHRQ
Ga0335020_0000032_29632_29946F017301AGGAMDWLYITNTSNILGGKMNTEQLKALLSSYGRSVLASGLALYMAGVTDPKDLWTALVAAIAPVAIRALNPNDKSFGILPDAKAVDEALKAAKAPVKKKAAKKPVK
Ga0335020_0000032_3181_3468F009885N/AMSAQDWAGFILTLLSISGIVLSGIRWYIKVQVKPIQEAVDDIRSETKTNGGSSMRDEIKYIKLEQERSAKTRLAYNDKLDHMYDILIEYISKNSK
Ga0335020_0000032_50132_50257F029106GAGMNKLQKVIIAVGVAGAVGITYVLTALKGMPEAFDWEDEEDE
Ga0335020_0000032_50254_50412F000264AGGAMMPGKLYTSEVWLKKRFLIDKKSPEEIAKECGASVETIYVYLAKFGLRKSRR
Ga0335020_0000032_6928_7101F021109AGGMNTLDTLRAEQQARYAIEHEKAMSKSPWIRESVQAYRNATPEQIAEVEAYRKRVYGW
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