Scaffold Ga0334946_000882

Overview

Basic Information

• Taxon OID: 3300034026
• Scaffold ID: Ga0334946_000882
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4686
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046937	Metagenome / Metatranscriptome	150	Y
F069865	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334946_000882_2347_2454	F046937	GGAG	MSEHGKCPMGNHPWLATFFVLTFLLVFAAHKLGLL
Ga0334946_000882_3833_4015	F069865	AGG	MWDRKRQIIWLGGGLLFGTFSLYPIARDDAGRFDLQYFLQLETLLVIIICVMFFIYSRKG