NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0007586

Scaffold Ga0334991_0007586


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0007586 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7369
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (82.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005705Metagenome / Metatranscriptome392Y
F006698Metagenome / Metatranscriptome366Y
F044488Metagenome / Metatranscriptome154Y
F073536Metagenome / Metatranscriptome120Y
F093757Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0007586_1424_1618F073536AGAAGMIWELYEVWAVEFDGHEELVDTTNSLKEAQLLAKESLTDDILEVIIYKEDEEGELVEVEVITGP
Ga0334991_0007586_1621_1800F044488AGGMRYGVSFSTDYMNGCVVIRDFKSVPLGRVLAIIPRDNRHEAEQEAQRISDLLNREEAKK
Ga0334991_0007586_2978_3109F093757AGGAMKTNKEKNTEHAGRELLRVRPKQAEYDFKALEAVIRQWIIGTK
Ga0334991_0007586_4619_4759F005705AGGAGMKITIKVPKKHRQHIVLFCAGTPFKQKVVQSKIKYKRNPKHKGREQ
Ga0334991_0007586_6900_7280F006698AGGMTRYYDTLAVYERNGFDIVVDKSYEDLDPKDCFDDECFDITEMYRDIECGNLDWFMLRVRVMVENIELSSEFLGGCLYKDAKEVLTDGTAEDLIDQALVEAKRDVYRLYKKFQDISWELDAEGATA
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