Scaffold Ga0334986

Basic Information
Taxon OID	3300034012 Open in IMG/M
Scaffold ID	Ga0334986_0005016 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034012 Open in IMG/M

Scaffold ID

Ga0334986_0005016 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10148
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (8.70%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10148

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (8.70%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F024318	Metagenome	206	Y
F030017	Metagenome	186	Y
F044503	Metagenome	154	Y
F104771	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334986_0005016_3342_3593	F005529	N/A	MPKGYPISKPDYSLEIRYRLRDGQWSPWSNKGKGKFESMDIVQRQIRTLAASYQGREKEVRFEWNGKLCNFSGEPTGQTIILM
Ga0334986_0005016_5429_6025	F008073	N/A	MEFVCGLKQFKEYKKEEASELLGCLSKLFGSYGWMTEARVDYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKESELTNEEIAYWIEVGKQIFRKNYQYAKETGYCLDISEWGMNWFNKFQEKGILKPWEFNVEEMENDVRKELRLTVRYVDETSVGAKTKNKIWKLFILKAIRENKDLDKLI
Ga0334986_0005016_6913_7062	F044503	N/A	MRGRNLTEHQKELIFEGWQDRKPIKVIAIEMGLSYGCIYFQLKKRCLVG
Ga0334986_0005016_8106_8438	F030017	N/A	VETQEIIDEIKRLYIEGFTRKKIAAKLGLDAEKVGYLLYTKLKLHEIYPRKLMDENIFQILSDHQVSRILTLATYGYCCREIAEDQNIEFRKVKKLLDVAEAKKMIEKKI
Ga0334986_0005016_8420_8557	F024318	N/A	MNKYTYLGREIQRPADLAPRGVKSTYQTEKLPFNETFERLWKLKR
Ga0334986_0005016_9816_10091	F104771	N/A	MGKLFNDSEMYLDQEVLFYYEGEEYCWTGHYEVKQCGEEADWDYCGDSEVEVEIETTKSITKFNEETNGWDEVTPTNSLIYEVVLNIERNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334986_0005016

Overview

Ecosystem & Geography

Associated Families

Sequences