Scaffold Ga0334979_0000348

Overview

Basic Information

• Taxon OID: 3300033996
• Scaffold ID: Ga0334979_0000348
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36190
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (16.95%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F024318	Metagenome	206	Y
F030017	Metagenome	186	Y
F034147	Metagenome / Metatranscriptome	175	Y
F044503	Metagenome	154	Y
F049637	Metagenome / Metatranscriptome	146	N
F059884	Metagenome / Metatranscriptome	133	Y
F104771	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334979_0000348_10345_10941	F008073	N/A	MEFVCGLKQFKEYKKEEANELLGCLSKLFGSYGWMTEDRVNYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKESEPTNEEIAYWIEVGKQIFRKNYQYAKETGYCLDISEWGMNWFNKFQEKGILKPWEFNVEEMENDVRKELRLTVRYVDETSVGAKTKNKIWKLFILQAIRENKDLDKLI
Ga0334979_0000348_11787_11936	F044503	N/A	MRGRSLTEYEKELIFEGWRDRKQIKVIAQEMGLSYGCIYFQLKKRCLVG
Ga0334979_0000348_12962_13294	F030017	N/A	METQEIIDEIKRLYIEGFTRKKIAAKLGLDAEKVGYLLYTKMKLHEIHPRKLMDENIFKILSDHQISRILTLATYGYCCREIAEDQNIEFRKVKKLLDVAEAKKMIEKKI
Ga0334979_0000348_13276_13413	F024318	N/A	MSNYIYLGKFIQRPADLAPRGVKSTYQTEKLPFNETFERLWKLKR
Ga0334979_0000348_14460_14735	F104771	N/A	MGKLFNDSEMYLDQEVLFFYEGEEYCWTGHYEVKQCGEEADWDYCGDSEVEVEIDTTKSITKFNEETNGWDEVTITNSLIYELVLHIERDL
Ga0334979_0000348_15966_16514	F001775	GAG	MEFSTDNQKIKIATLSFFAGILVAYIFFPKIESETVYKFETVTKTDTLFVDKLETVYIPQTKIKTEVLRDTILIDFKPQISQFKASFPFEHGSTSISGEVLGEVLKMTASNDYKIPVVTNTITNTETKTIIEKPKGIYLGAGINSLMQPSGKVAYLDNKYLFEYQYQPLQKIHQIGVSKKLF
Ga0334979_0000348_18397_18612	F049637	N/A	LVNEKVLNEMNLLKSDELGVPSTFLAIFANVTAMAGLQMVNVVFTSVISILSIIYLVYKIRNEIKKTNGKV
Ga0334979_0000348_28556_28885	F059884	GAG	LLLVGRTKIPYEQLFHLSRKELKVLVKGHEIDQKDMIEAMRKQSIILLQPHLKKGVNLDPTKIWPLAWDNIPKPLESTPQDFAKAKKLLEIASKLEKNGKSKNRGRDWR
Ga0334979_0000348_28927_29256	F034147	N/A	MAKYHFTPFKEGEIFFYPNLGALANFEDFTGKSLGEVFQNGKMPKLDLIYALLIECHKVACIRKSANPISLDELKTWVEGKEVINLFNDVLADLLLELGIGESTEEKKT
Ga0334979_0000348_8258_8509	F005529	N/A	MAKGYPISKPDYSLEIRYRLRDGQWSPWSNKGKGKFESMDIVQRQIRTLAASYQGREKEVRFEWNGKLCNFTGEPTGQTIILM