Scaffold Ga0334992_0004996

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0004996
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9534
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000868	Metagenome / Metatranscriptome	853	Y
F017829	Metagenome / Metatranscriptome	238	Y
F029434	Metagenome / Metatranscriptome	188	Y
F051126	Metagenome / Metatranscriptome	144	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0004996_208_438	F000868	AGGTGG	MSFLENENQMVIDATYSEIGDMLVEDWVNSNLDEGQMFADFRFAEMSDNNYLKGRFNQFYDLKPGDQYYLEWDEEK
Ga0334992_0004996_4485_4745	F017829	AGG	MANRFRVEIYDANKLNDLTIHLDQGVDKEYLTELVFSNIKNFSGKINAYVFDNVKKKKTTAMFIDEDVVQKVKEQTSQLTRVGLGL
Ga0334992_0004996_8041_8250	F051126	AGG	MSAKPYTIQDLLIGKTYRSTNRHDEGVIQYATPRPEIWYGSEFQAYAIEVRSTRGIKNFWATVAVKVGD
Ga0334992_0004996_8673_8825	F029434	AGG	MKKYTFGVWLDIDAEDENQAISLFDSVVKNTFVSDSYCFEWKEVADEIAV
Ga0334992_0004996_9282_9401	F085708	AGAAG	MNRLLTTLVQLGIGIPALLMARLVWREILSDYRKWANSH