Scaffold Ga0334992_0000548

Overview

Basic Information

• Taxon OID: 3300033992
• Scaffold ID: Ga0334992_0000548
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30895
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (16.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F014605	Metagenome / Metatranscriptome	261	N
F024318	Metagenome	206	Y
F030017	Metagenome	186	Y
F034898	Metagenome / Metatranscriptome	173	Y
F044503	Metagenome	154	Y
F055561	Metagenome	138	N
F069854	Metagenome	123	N
F095170	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334992_0000548_10385_10678	F055561	N/A	MSFAEYQSVSYGYQLRESKHEQLFRSIWVQLNNVNAQKKADIIKNPEKYWRIPLIDKKEIQVPTQEEMEKAYEIAKQWQTLNFTDEANFDTVTKRIN
Ga0334992_0000548_11633_12097	F095170	N/A	MAKVNGSALFVTVGLERVAKSTAYNLSAEMSQLDKTSNESGYFADHISKLGSWSLSSDSLYIQDGYSFGDLFNAYVTRQRVYLSAGQEDNLTFIGLATIESLRQLGEMENAAAISVTFKGVGGLYPTILPSERFIIDELFEIIIDQDGNFLVYT
Ga0334992_0000548_12090_12515	F069854	N/A	MRNIKLYIRKAYWTALNNTITHKGLLVPCYDSFAPDNVTFPYILITNQTQVDDKDNQEFNYITTITLDVVTAAVAPYGRLDADLIADAILQKVCLYPPNYPTIDIGKIVTAKLIDQASLSSITDTNIVHREILTIENWVDG
Ga0334992_0000548_21863_22114	F005529	N/A	MAKGYPITKPDYSLEIRYRLRDGNWSPWSNKGKGKFECIELVQRQIRTLAAAYQGREKEVRFEWNGKICNFSGEPTGQTIILM
Ga0334992_0000548_23165_23761	F008073	N/A	MEFVCGLKQFKEYKKEEANELLGCLSKLFGSYGWMSEARVDYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKEKEPTTEEIAYWIEIGKQIFRDNYQHAKETGFCRDIAEWGINWFNKFQEKGILKPWEFNVEQIENDARKELRLTTRYVEESTVGAKTKNKIWKLFILDAIKNNKNLDKLI
Ga0334992_0000548_24658_24807	F044503	N/A	MRGRNLTEYQKELIFEAWQDRKQIKVIAHEMGLSYGCIYFQLKKRCLVG
Ga0334992_0000548_24785_25150	F034898	N/A	MTREEAILELNHRATQKYLVYLALQEIMLDYYEDVTMLKAFDGDLKTKHKNMINALKRKSTEAFRFLENYDGGEATIKQFHEFVTLFERLHNSIDQGGNIFHNCLAAIEQILNDHEGTKS
Ga0334992_0000548_25866_26180	F030017	GGA	MQKIKCLYLEGLTRKKIAKTLGLDAQKVGYLLYTKMKLHEIYPRKLIDENIFQILTDHQISRILTLATYGYCCREIAEDQNLEFKKVKKLLDVAESKNMIEKKV
Ga0334992_0000548_26180_26317	F024318	N/A	MSNYTYLGKFIKRPGDLAPKGVASTYDKEKLPFNETFERLWKLAR
Ga0334992_0000548_28881_29429	F001775	N/A	MKELLDDERIRIAIVAFLMGVVLTFVIYPKPEQETVYKFKTVTKTDTLFVDKLETVYIPKTRIKTKVLRDTVLIDFKPQISQFTASFPFEHGSTSVSGEVLGEVLKMTATNDYKLPVVTNTITETKTETIVKKPKGIYLGAGVNSLLQPSASVAYLDNKYLFQYQFQPMQKVHQIGVAKKLF
Ga0334992_0000548_985_1272	F014605	N/A	MIVNLAIALTDIEGKEITNENGEFMLLSKMVGNALFSAEEKEDPIRLYELAKKIYYSEGDIEVSKSDADLIKEKVKAKGFTVLVLGPLYEALKEK