Scaffold Ga0307510_10058168

Overview

Basic Information

• Taxon OID: 3300033180
• Scaffold ID: Ga0307510_10058168
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4006
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.654
  • Long. (^o): -122.839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014688	Metagenome	260	Y
F087984	Metagenome	109	Y
F092968	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_100581681	F092968	N/A	GMRESLGSEGIWPHGLGGGRRRDVEDAGVDREWRPDVTSGRRPVQSNG
Ga0307510_100581683	F087984	GAG	VLVGGTFFYGLRGFDFSYDEVKRVVVIGLIGFFLFIASPA
Ga0307510_100581684	F014688	N/A	MLSEVLSKCGVRGRTELHERVLTMNANKKPKEGRRACLRRGGKMA
Ga0307510_100581686	F014688	N/A	MLSEVQSKCGVRGRTELHERVLTMKRNENPKEGRQVCLRRGGKMA