Scaffold Ga0307510_10000006

Overview

Basic Information

• Taxon OID: 3300033180
• Scaffold ID: Ga0307510_10000006
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 566474
• Total Scaffold Genes: 535
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 416 (77.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.654
  • Long. (^o): -122.839

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002655	Metagenome / Metatranscriptome	539	Y
F051460	Metagenome / Metatranscriptome	144	Y
F075326	Metagenome / Metatranscriptome	119	Y
F094031	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307510_100000061	F094031	GGAG	MKIENLSKDLDTVAMTEVTGGTALTGQVVPTNVQSNALEQAFQSKR
Ga0307510_100000062	F002655	GGAG	MKIENLSHDLDASAMTAVTGGTALTGQVVPTNVQSNALGQGFQVASCAPVAIGNDAEQSNYSSQETDLPVGSLIVSIPRCY
Ga0307510_10000006388	F051460	GAGG	MMQTDGLAETQKLQIPQDLVSALGQHKPKTDYGIEALKPSFFGRLLEKLIGPKN
Ga0307510_10000006441	F075326	GAG	MAIRLRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNAEH