NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F075326

Metagenome / Metatranscriptome Family F075326

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F075326
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 84 residues
Representative Sequence MAIRLRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNAEH
Number of Associated Samples 92
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 63.87 %
% of genes near scaffold ends (potentially truncated) 26.05 %
% of genes from short scaffolds (< 2000 bps) 74.79 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (98.319 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(15.126 % of family members)
Environment Ontology (ENVO) Unclassified
(55.462 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(52.941 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 24.56%    β-sheet: 15.79%    Coil/Unstructured: 59.65%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF03631Virul_fac_BrkB 11.76
PF10604Polyketide_cyc2 9.24
PF02639DUF188 7.56
PF03364Polyketide_cyc 6.72
PF00270DEAD 6.72
PF14470bPH_3 4.20
PF01546Peptidase_M20 2.52
PF00271Helicase_C 1.68
PF00230MIP 1.68
PF11219DUF3014 1.68
PF01124MAPEG 0.84
PF00571CBS 0.84
PF12796Ank_2 0.84
PF00830Ribosomal_L28 0.84
PF02798GST_N 0.84
PF14850Pro_dh-DNA_bdg 0.84
PF12643MazG-like 0.84
PF10282Lactonase 0.84
PF03350UPF0114 0.84

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 119 Family Scaffolds
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 11.76
COG1671Uncharacterized conserved protein YaiI, UPF0178 familyFunction unknown [S] 7.56
COG0580Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)Carbohydrate transport and metabolism [G] 1.68
COG0227Ribosomal protein L28Translation, ribosomal structure and biogenesis [J] 0.84
COG2862Uncharacterized membrane protein YqhAFunction unknown [S] 0.84


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms98.32 %
UnclassifiedrootN/A1.68 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001661|JGI12053J15887_10032280All Organisms → cellular organisms → Bacteria → Proteobacteria2943Open in IMG/M
3300002245|JGIcombinedJ26739_100494753All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1100Open in IMG/M
3300004153|Ga0063455_101114180All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria584Open in IMG/M
3300005260|Ga0074072_1070978All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria961Open in IMG/M
3300005331|Ga0070670_100718965All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria899Open in IMG/M
3300005335|Ga0070666_10054391All Organisms → cellular organisms → Bacteria → Proteobacteria2700Open in IMG/M
3300005337|Ga0070682_100720056All Organisms → cellular organisms → Bacteria → Proteobacteria802Open in IMG/M
3300005344|Ga0070661_101352027All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria598Open in IMG/M
3300005355|Ga0070671_100281402All Organisms → cellular organisms → Bacteria → Proteobacteria1415Open in IMG/M
3300005455|Ga0070663_100292488All Organisms → cellular organisms → Bacteria → Proteobacteria1301Open in IMG/M
3300005466|Ga0070685_10146524All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1492Open in IMG/M
3300005529|Ga0070741_10006966All Organisms → cellular organisms → Bacteria → Proteobacteria23820Open in IMG/M
3300005529|Ga0070741_10094730All Organisms → cellular organisms → Bacteria → Proteobacteria3198Open in IMG/M
3300005533|Ga0070734_10161086All Organisms → cellular organisms → Bacteria → Proteobacteria1300Open in IMG/M
3300005533|Ga0070734_10881461All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria507Open in IMG/M
3300005534|Ga0070735_10068773All Organisms → cellular organisms → Bacteria → Proteobacteria2288Open in IMG/M
3300005534|Ga0070735_10258342All Organisms → cellular organisms → Bacteria → Proteobacteria1055Open in IMG/M
3300005536|Ga0070697_101852589All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria540Open in IMG/M
3300005537|Ga0070730_11040749All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria509Open in IMG/M
3300005539|Ga0068853_100238841All Organisms → cellular organisms → Bacteria → Proteobacteria1665Open in IMG/M
3300005539|Ga0068853_100564609All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1079Open in IMG/M
3300005614|Ga0068856_100584963All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1138Open in IMG/M
3300005842|Ga0068858_100003806All Organisms → cellular organisms → Bacteria → Proteobacteria14917Open in IMG/M
3300006165|Ga0075443_10206311All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria705Open in IMG/M
3300006893|Ga0073928_10837208All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria634Open in IMG/M
3300009093|Ga0105240_10452030All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1437Open in IMG/M
3300009093|Ga0105240_11028088All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria880Open in IMG/M
3300009093|Ga0105240_11317954Not Available761Open in IMG/M
3300009101|Ga0105247_10040610All Organisms → cellular organisms → Bacteria → Proteobacteria2844Open in IMG/M
3300009174|Ga0105241_10398297All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1207Open in IMG/M
3300009177|Ga0105248_10330561All Organisms → cellular organisms → Bacteria → Proteobacteria1717Open in IMG/M
3300009545|Ga0105237_10685146All Organisms → cellular organisms → Bacteria → Proteobacteria1032Open in IMG/M
3300009545|Ga0105237_10814520All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria941Open in IMG/M
3300009553|Ga0105249_10145708All Organisms → cellular organisms → Bacteria → Proteobacteria2275Open in IMG/M
3300010371|Ga0134125_10120060All Organisms → cellular organisms → Bacteria → Proteobacteria2927Open in IMG/M
3300010375|Ga0105239_10710076All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1150Open in IMG/M
3300010375|Ga0105239_11143204All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria897Open in IMG/M
3300010375|Ga0105239_11576877All Organisms → cellular organisms → Bacteria759Open in IMG/M
3300012212|Ga0150985_102163732All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria546Open in IMG/M
3300012349|Ga0137387_10780328All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria691Open in IMG/M
3300012359|Ga0137385_10089724All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2726Open in IMG/M
3300012469|Ga0150984_100784170All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria631Open in IMG/M
3300012469|Ga0150984_110186678All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria790Open in IMG/M
3300012469|Ga0150984_114953352All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria991Open in IMG/M
3300012582|Ga0137358_10631878All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria717Open in IMG/M
3300012922|Ga0137394_11577636All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria514Open in IMG/M
3300012923|Ga0137359_10936589All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria745Open in IMG/M
3300012924|Ga0137413_10008713All Organisms → cellular organisms → Bacteria → Proteobacteria4838Open in IMG/M
3300012924|Ga0137413_10424019All Organisms → cellular organisms → Bacteria → Proteobacteria962Open in IMG/M
3300012925|Ga0137419_10404040All Organisms → cellular organisms → Bacteria → Proteobacteria1068Open in IMG/M
3300012927|Ga0137416_11521875All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria608Open in IMG/M
3300012929|Ga0137404_10172201All Organisms → cellular organisms → Bacteria → Proteobacteria1816Open in IMG/M
3300012929|Ga0137404_11538203All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria616Open in IMG/M
3300012930|Ga0137407_10135369All Organisms → cellular organisms → Bacteria → Proteobacteria2159Open in IMG/M
3300012930|Ga0137407_12297531All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria515Open in IMG/M
3300012931|Ga0153915_10733361All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1143Open in IMG/M
3300013297|Ga0157378_12095448All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria616Open in IMG/M
3300013306|Ga0163162_10506222All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1338Open in IMG/M
3300013307|Ga0157372_12136004All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria643Open in IMG/M
3300014501|Ga0182024_10654645All Organisms → cellular organisms → Bacteria → Proteobacteria1305Open in IMG/M
3300015051|Ga0137414_1058500All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1072Open in IMG/M
3300015242|Ga0137412_10012755All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria6796Open in IMG/M
3300017994|Ga0187822_10152579All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria743Open in IMG/M
3300019270|Ga0181512_1212676All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria525Open in IMG/M
3300019789|Ga0137408_1377047All Organisms → cellular organisms → Bacteria1541Open in IMG/M
3300019890|Ga0193728_1049607All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2042Open in IMG/M
3300020579|Ga0210407_10655607All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria816Open in IMG/M
3300021168|Ga0210406_10122089All Organisms → cellular organisms → Bacteria2201Open in IMG/M
3300021377|Ga0213874_10086849All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1022Open in IMG/M
3300021405|Ga0210387_11509752All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria575Open in IMG/M
3300021474|Ga0210390_10634029All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria894Open in IMG/M
3300024288|Ga0179589_10391508All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria636Open in IMG/M
3300025900|Ga0207710_10014629All Organisms → cellular organisms → Bacteria → Proteobacteria3312Open in IMG/M
3300025911|Ga0207654_10480996All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria874Open in IMG/M
3300025911|Ga0207654_10544636Not Available824Open in IMG/M
3300025913|Ga0207695_10198388All Organisms → cellular organisms → Bacteria → Proteobacteria1922Open in IMG/M
3300025913|Ga0207695_11512872All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria552Open in IMG/M
3300025913|Ga0207695_11628447All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria526Open in IMG/M
3300025914|Ga0207671_10028996All Organisms → cellular organisms → Bacteria → Proteobacteria4135Open in IMG/M
3300025914|Ga0207671_10618420All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria863Open in IMG/M
3300025925|Ga0207650_11856953All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria509Open in IMG/M
3300025931|Ga0207644_10084208All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2357Open in IMG/M
3300025945|Ga0207679_10893686All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria812Open in IMG/M
3300025949|Ga0207667_11840641All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria569Open in IMG/M
3300026088|Ga0207641_12564179All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria508Open in IMG/M
3300027817|Ga0209112_10192011All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria699Open in IMG/M
3300027895|Ga0209624_10342253All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria997Open in IMG/M
3300027986|Ga0209168_10056005All Organisms → cellular organisms → Bacteria → Proteobacteria2097Open in IMG/M
3300027986|Ga0209168_10300031All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria789Open in IMG/M
3300028047|Ga0209526_10015555All Organisms → cellular organisms → Bacteria → Proteobacteria5271Open in IMG/M
3300028380|Ga0268265_10153518All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1945Open in IMG/M
3300028536|Ga0137415_10493214All Organisms → cellular organisms → Bacteria → Proteobacteria1032Open in IMG/M
3300030521|Ga0307511_10000165All Organisms → cellular organisms → Bacteria → Proteobacteria64541Open in IMG/M
3300030521|Ga0307511_10024890All Organisms → cellular organisms → Bacteria → Proteobacteria5532Open in IMG/M
3300031231|Ga0170824_102999072All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria723Open in IMG/M
3300031231|Ga0170824_113612829All Organisms → cellular organisms → Bacteria → Proteobacteria1761Open in IMG/M
3300031231|Ga0170824_114159976All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria562Open in IMG/M
3300031231|Ga0170824_116126383All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria980Open in IMG/M
3300031232|Ga0302323_102742276All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria563Open in IMG/M
3300031446|Ga0170820_16291995All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria978Open in IMG/M
3300031474|Ga0170818_104437714All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria614Open in IMG/M
3300031474|Ga0170818_115644267All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1182Open in IMG/M
3300031507|Ga0307509_10000005All Organisms → cellular organisms → Bacteria → Proteobacteria435959Open in IMG/M
3300031708|Ga0310686_102779372All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria520Open in IMG/M
3300031718|Ga0307474_10854917All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria720Open in IMG/M
3300031726|Ga0302321_100105450All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2830Open in IMG/M
3300031962|Ga0307479_10007186All Organisms → cellular organisms → Bacteria → Proteobacteria10264Open in IMG/M
3300032770|Ga0335085_11216448All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium800Open in IMG/M
3300032782|Ga0335082_10571799All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria992Open in IMG/M
3300032783|Ga0335079_10144797All Organisms → cellular organisms → Bacteria → Proteobacteria2669Open in IMG/M
3300032783|Ga0335079_10814843All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria966Open in IMG/M
3300032828|Ga0335080_11265138All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria739Open in IMG/M
3300032893|Ga0335069_10003793All Organisms → cellular organisms → Bacteria22639Open in IMG/M
3300032893|Ga0335069_11607185All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria696Open in IMG/M
3300032955|Ga0335076_11177497All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria650Open in IMG/M
3300033180|Ga0307510_10000006All Organisms → cellular organisms → Bacteria → Proteobacteria566474Open in IMG/M
3300033180|Ga0307510_10007149All Organisms → cellular organisms → Bacteria13289Open in IMG/M
3300033480|Ga0316620_11909421All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria590Open in IMG/M
3300034384|Ga0372946_0035423All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2229Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil15.13%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere13.45%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil7.56%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil7.56%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil5.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.20%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.20%
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza4.20%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.20%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.36%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere3.36%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.52%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.52%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere2.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.68%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.68%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.68%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.84%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.84%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.84%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.84%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.84%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.84%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.84%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.84%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.84%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.84%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.84%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.84%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots0.84%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.84%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.84%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300005260Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, AustraliaEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006165Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNAEnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015051Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300019270Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300019890Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021377Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7Host-AssociatedOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025900Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027817Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300030521Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EMHost-AssociatedOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031232Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3EnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031507Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EMHost-AssociatedOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031726Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033180Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EMHost-AssociatedOpen in IMG/M
3300033480Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_BEnvironmentalOpen in IMG/M
3300034384Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12053J15887_1003228013300001661Forest SoilMALRLRRRPKTQPPLAVLGTYTFPTRTVQIVLMEDDRVQWICDCEKFRRWSTHKDPPWCKHIAKAAARRSIER
JGIcombinedJ26739_10049475313300002245Forest SoilMALRLRRRPKTQLPLAVLGTYAFPTRTVQIVLMEDDRIQWICDCEKFRRWSTHKDPPWCKHIAKAAARRSIERLTRRIAVSRNLEH*
Ga0063455_10111418013300004153SoilMAIRLRRRPRPQPPVAVLGTYAFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERLTRRVGVPRNTEH*
Ga0074072_107097823300005260SoilMAIRLRRRPIPLPPVAVLGTYTFPTRTVQVVLMDDDRIQWICDCEKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNAEH*
Ga0070670_10071896513300005331Switchgrass RhizosphereMAIRLRRRPRPQPPVTVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAVPRTGEH*
Ga0070666_1005439133300005335Switchgrass RhizosphereMPLRLRRRPKVQPPLAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWSTHKDPPWCKHIAKAAARRSIERLTRRVAVPRNLEH*
Ga0070682_10072005623300005337Corn RhizosphereMTVLGTYSFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERLTRRVGVPKNAEH*
Ga0070661_10135202723300005344Corn RhizosphereMAIRLRRRPKPQSPVEVLGTYTFPTRTVQVVLTEDDRIQWVCDCEKFQRWTAHKEPLWCKHIAKAAARRSIERFTRRVAVPRNSEH*
Ga0070671_10028140233300005355Switchgrass RhizosphereMAIRLRRRPRPQPPVTVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAAPRTGEH*
Ga0070663_10029248823300005455Corn RhizosphereMAIRLRRRPRPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAAPRTGEH*
Ga0070685_1014652413300005466Switchgrass RhizosphereMPLRLRRRPKVQPPLAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWSTHKDPPWCKHIAKAAARRSI
Ga0070741_1000696693300005529Surface SoilMAIRFRRRPKPQQPVVVLGTYTFPTRTVQVVLMENDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRAAVPRNLEH*
Ga0070741_1009473053300005529Surface SoilMALKLRRRLKADPKVEVLGTYSFPTRTVKVVQTEDDRIQWICDCEKFQRWTAHKEPLWCKHIAKAAARRSIERFTRRVALPRTLEY*
Ga0070734_1016108623300005533Surface SoilMAIRLRRRRKPELPQEVLATYQFPTRTVQVVRLADERVHWVCDCEKYRRWNQRREPPWCKHIAKAAARRSIERLTRRVARSPN*
Ga0070734_1088146123300005533Surface SoilMALRFRRPPKPQAPVAVLGTYAFPSRTVQVVLMEDERIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERL
Ga0070735_1006877333300005534Surface SoilMLARIRRRPKPQSQVTVLATYSFPSRTVQVVQLEDDRIQWVCDCEKFRAWTRHKEPLWCKHIAKAAARRSIERLTRRVAGGRISIS*
Ga0070735_1025834213300005534Surface SoilGSYAWKMAIRFRRRPKPQQPVVVLGTYTFPTRTVQVVLMENDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRAAVPRNLEH*
Ga0070697_10185258913300005536Corn, Switchgrass And Miscanthus RhizosphereYPQVIHRQSTAERDYARPMALRLRRRPKIQPPLTVLGTYTFPTRTVQVVLMEDERIQWICDCEKFRRWSTRKDPPWCKHIAKAAARRSIERLTRRVAVSRNLEH*
Ga0070730_1104074913300005537Surface SoilVLGTYSFPSRTVRVLQTEDERIQWTCDCEKFRRQLAYKEPLWCKHIAKAAARRSIERLTRRVAVPRGVDRPQELGS*
Ga0068853_10023884143300005539Corn RhizosphereMTVLGTYSFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAAPRTGE
Ga0068853_10056460913300005539Corn RhizosphereMAIRLRRRPKPQSPVEVLGTYTFPTRTVQVVLTEGDRIQWVCDCEKFQRWTVHKEPLWCKHIAKAAARRSIERFTRRVAVPRNSEH*
Ga0068856_10058496323300005614Corn RhizosphereVIGTYTFPSRTVQILQTPDERIQWTCDCEKFRRQTATREPLWCKHIAKAAARRSIERLTRRVAVPRPLDR*
Ga0068858_10000380673300005842Switchgrass RhizosphereMAIRLRRRPRPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAVPRAGEH*
Ga0075443_1020631113300006165MarineMAIRLRRRPKIQAPVAVLGTYTFPTRTVQVVLTEDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRVAVPRNIEH*
Ga0073928_1083720823300006893Iron-Sulfur Acid SpringMALRLRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCDKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNPEH*
Ga0105240_1045203023300009093Corn RhizosphereMPLRLRSRVKAHPKGQVLGTYSFTSRTVKVVLTEDDRVQWVCDCEKFQRWTSHREPLWCKHIAKAAARRSIERFTRRVALPRSLEY*
Ga0105240_1102808813300009093Corn RhizosphereMLAGMAIRLRRRPKVQPPVAVLGTYTFPTRTVQVVLTEDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRVAVPRNIEH*
Ga0105240_1131795423300009093Corn RhizosphereQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERLTRRVGVPKNAEH*
Ga0105247_1004061033300009101Switchgrass RhizosphereVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAVPRAGEH*
Ga0105241_1039829733300009174Corn RhizosphereMAIRLRRRPKLQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNAEH*
Ga0105248_1033056123300009177Switchgrass RhizosphereVTVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAVPRTGEH*
Ga0105237_1068514623300009545Corn RhizosphereMLAVMAIRLRRRPKVQPAVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRVAVPRNIEH*
Ga0105237_1081452013300009545Corn RhizosphereVTVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTSHKEPLWCKHIAKAAARRSIERFTRRVAVPRTGEH*
Ga0105249_1014570813300009553Switchgrass RhizosphereVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAAPRTGEH*
Ga0134125_1012006053300010371Terrestrial SoilMAIRIRRRSKPQTPVAVLGTYSFPTRTVQVVLMEDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRVAVPRNPEH*
Ga0105239_1071007633300010375Corn RhizosphereVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAVPGNAEH*
Ga0105239_1114320423300010375Corn RhizosphereVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAAPRTGEH*
Ga0105239_1157687713300010375Corn RhizosphereMTVLGTYSFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAAPRTGEH*
Ga0150985_10216373223300012212Avena Fatua RhizosphereIRLRRRPRPQPPVAVLGTYTFPTRTVQVVLMEDERIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRVGVPRNVEH*
Ga0137387_1078032823300012349Vadose Zone SoilMLAPMLLRLRRRPKIQPPLAVLGTYSFPTRTVQVVLMEDERIQWICDCEKFRRWSHHKDPPWCKHIAKAAARRSIERLTRRVAVQRNLEH*
Ga0137385_1008972433300012359Vadose Zone SoilMLAPMLLRLRRRPKIQPPLAVLGTYSFPTRTVQVVLMEDERIQWICDCEKFRRGSHHKDPPWCKHIAKAAARRSIERLTRRVAVQRNLEH*
Ga0150984_10078417013300012469Avena Fatua RhizosphereRWPKPQPSMTVLGTYTFPTRTVQVVLMEDDRIQWVCDCEKFRRWTTHKEPLWCKHIAKAAARRSIERLTRRVGAPRNAEH*
Ga0150984_11018667823300012469Avena Fatua RhizosphereMAIRLRRRPRPQPPVAVLGTYAFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERLTRRVAVPRTAEH*
Ga0150984_11495335223300012469Avena Fatua RhizosphereRPRPQPPVAVLGTYTFPTRTVQVVLMEDERIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRVGVPRNVEH*
Ga0137358_1063187813300012582Vadose Zone SoilIHRQSTPERDYAHPMPLRLRRRPKIQPPLAVLGTYTFPTRTVQVVLMEDERIQWICDCEKFRRWSTHRDPPWCKHIAKAAARRSIERLTRRVAVSRNLEH*
Ga0137394_1157763623300012922Vadose Zone SoilSMALRLRRRPKIQPPHTVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWSTHKDPPWCKHIAKAAARRSIERLTRRVALSRNLEH*
Ga0137359_1093658913300012923Vadose Zone SoilMPLRLRRRPKIQPPLAVLGTYTFPTRTVQVVLMEDERIQWICDCEKFRRWSHHKDPPWCKHIAKAAARRSIERLTRRVGVPRNLGH*
Ga0137413_1000871323300012924Vadose Zone SoilMAIRLRRRPKLQPPVAVLGTYTFPTRTVQVVLMGDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRVAVPRNIEH*
Ga0137413_1042401923300012924Vadose Zone SoilMALRLRRRPKIQPPLTVLGTYTFPTRTVQVVLMEDERIQWICDCEKFRRWSHHKDPPWCKHIAKAAARRSIERLTRRVAVQRNLEH*
Ga0137419_1040404023300012925Vadose Zone SoilMLAPMPLRLRRRPKIQPPLAVLGTYSFPTRTVQVVLTEDERIQWICDCEKFRRWSHHKDPPWCKHIAKAAARRSIERLTRRVAVQRNLEH*
Ga0137416_1152187513300012927Vadose Zone SoilMALRLRRRPKIQPPLTVLGTYTFPTRTVQVVLMEDERIQWICDCEKFRRWSTRKDPPWCKHIAKAAARRSIERLTRRVAVSRNLEH*
Ga0137404_1017220123300012929Vadose Zone SoilMALRLRRRPKIQPPHTVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWSTRKDPPWCKHIAKAAARRSIERLTRRVAVTRNLEH*
Ga0137404_1153820323300012929Vadose Zone SoilVAVLGTYSFPTRTVQVVLMEDERIQWICDCEKFRRWSHHKDPPWCKHIAKAAARRSIERLTRRVAVQRNLEH*
Ga0137407_1013536913300012930Vadose Zone SoilMLLRLRRRPKIQPPLAVLGTYSFPTRTVQVVLMEDERIQWICDCEKFRRWSHHKDPPWCKHIAKAAARRSIERLTRRVAVQRNLEH*
Ga0137407_1229753123300012930Vadose Zone SoilMALRLRRRPKIQPPHTVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWSSRKDPPWCKHIAKAAARRSIERLTRRVAVTRNLEH*
Ga0153915_1073336113300012931Freshwater WetlandsMAIRFRRRPKPNAAVSVLGTYQFPSRTVQVVLTEDERIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRVAVPRNLEH*
Ga0157378_1209544823300013297Miscanthus RhizosphereVTVLGTYSFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAAPRTGEH*
Ga0163162_1050622223300013306Switchgrass RhizosphereLGTYTFPTRTVQVVLMEDDRVQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAAPRTGEH*
Ga0157372_1213600413300013307Corn RhizosphereVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTDKEPLWCKHIAKAAARRSIERFTRRVAVPRTGEH*
Ga0182024_1065464523300014501PermafrostMTLRLRRWSKPQPPVAVLGTYQFPSRTVQVVLMEDERIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRVALPRNLEH*
Ga0137414_105850013300015051Vadose Zone SoilSPSGEPAVLGTYTFPTFPSRTVQVLQTQDERIQWTCDCERFRRQTDQREPLWCKHIAKAAARRSIERLTRRIAIPRGIEG*
Ga0137412_1001275513300015242Vadose Zone SoilMALRLRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCDKFRRWTTHREPPWCKHIAKAAARRSIERLTRRVAVPRNLEH*
Ga0187822_1015257923300017994Freshwater SedimentMAIRIRRRSKPQTPVAVLGTYSFPTRTVQVVLMEDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSLERLTRRVAVPRGPDH
Ga0181512_121267623300019270PeatlandRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCENFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVGVPRNADH
Ga0137408_137704733300019789Vadose Zone SoilMALRFRRRSKSNTQVEVLGTYSFPTRTVKVVLTEDDRIQWICDCEKFQRWTSHKEPLWCKHIAKAAARRSIERFTRRVGLPRNLEH
Ga0193728_104960723300019890SoilMALRLRRRPKPQPPLAVLGTYTFPTRTVQVVLMEDDRVQWICDCEKFRRWSTHKDPPWCKHIAKAAARRSIERLTRRVAVARNLEH
Ga0210407_1065560713300020579SoilMALRLRRRPKIQPPLTVLGTYTFPTRTVQVVLMEDERIQWICDCEKFRRWSTRKDPPWCKHIAKAAARRSIERLTRRVAVPRNLEH
Ga0210406_1012208923300021168SoilMALRLRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCDKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNLEH
Ga0213874_1008684923300021377Plant RootsMAVRLRRRKPSPLPQEVLGTYHFPTRTVQVVLTSDQRIQWVCDCEKYRRWSRHREPPWCKHIAKAAARRSIERLTRRVALPSNPEH
Ga0210387_1150975213300021405SoilMLGTYTFPTRTVQVVLMEDDRVQWICDCDKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNFEH
Ga0210390_1063402923300021474SoilMALRLRRRATPRPPVAVLGTYHFPSRTVQVVLMEDERIQWICDCEKFRRWTSHKEPPWCKHIAKAAARRSIERLTRRVAVPRN
Ga0179589_1039150823300024288Vadose Zone SoilMAIRLRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKSRRWTTHKAPPWCKHIAKAAARRSIERLTRRVAVPRNAEH
Ga0207710_1001462923300025900Switchgrass RhizosphereMAIRLRRRPRPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAVPRAGEH
Ga0207654_1048099613300025911Corn RhizosphereMAIRLRRRPKLQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNAEH
Ga0207654_1054463613300025911Corn RhizosphereRTQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAAPRTGEH
Ga0207695_1019838813300025913Corn RhizosphereMAIRLRRRPKPQSPVEVLGTYTFPTRTVQVVLTEDDRIQWVCDCEKFQRWTAHKEPLWCKHIAKAAARRSIERFTRRVAVPRNSEH
Ga0207695_1151287213300025913Corn RhizosphereMTVLGTYSFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERLTRRVGVPKNAEH
Ga0207695_1162844723300025913Corn RhizosphereMAIRLRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRV
Ga0207671_1002899623300025914Corn RhizosphereMAIRLRRRPRPQPPVTVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTSHKEPLWCKHIAKAAARRSIERFTRRVAVPRTGEH
Ga0207671_1061842013300025914Corn RhizosphereMLAGMAIRLRRRPKVQPPVAVLGTYTFPTRTVQVVLTEDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRVAVPRNIEH
Ga0207650_1185695313300025925Switchgrass RhizosphereMAIRLRRRPRPQPPVTVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAVPRTGEH
Ga0207644_1008420833300025931Switchgrass RhizosphereMAIRLRRRPRPQPPVTVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAAPRTGEH
Ga0207679_1089368623300025945Corn RhizosphereMAIRLRRRPRPQPPMTVLGTYSFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERLTRRVGVPKNAEH
Ga0207667_1184064113300025949Corn RhizosphereMAIRLRRRTRPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERLTRRVGVPKNAEH
Ga0207641_1256417913300026088Switchgrass RhizosphereMAIRLRRRLRPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPLWCKHIAKAAARRSIERFTRRVAVPRTGEH
Ga0209112_1019201113300027817Forest SoilMALRFRRRSKANNQVEVLGTYSFTSRTVKVVLTDDDRIQWVCDCEKFQRWTSHKEPLWCKHIAKAAARRSLERLTRRVAVPRSLEH
Ga0209624_1034225323300027895Forest SoilRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCDKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNLEH
Ga0209168_1005600513300027986Surface SoilMLARIRRRPKPQSQVTVLATYSFPSRTVQVVQLEDDRIQWVCDCEKFRAWTRHKEPLWCKHIAKAAARRSIERLTRRVAGGRISIS
Ga0209168_1030003123300027986Surface SoilMAIRFRRRPKPQQPVVVLGTYTFPTRTVQVVLMENDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRAAVPRNLEH
Ga0209526_1001555553300028047Forest SoilMALRLRRRPKTQLPLAVLGTYAFPTRTVQIVLMEDDRIQWICDCEKFRRWSTHKDPPWCKHIAKAAARRSIERLTRRIAVSRNLEH
Ga0268265_1015351823300028380Switchgrass RhizosphereMAIRLRRRPKPQSPVEVLGTYTFPTRTVQVVLTEGDRIQWVCDCEKFQRWTVHKEPLWCKHIAKAAARRSIERFTRRVAVPRNSEH
Ga0137415_1049321423300028536Vadose Zone SoilMALRLRRRPKPQPPLTVLGTYTFPTRTVQVVLMEDERVQWICDCEKFRRWSSRKDPPWCKHIAKAAARRSIERLTRRVAVPRNLEH
Ga0307511_10000165303300030521EctomycorrhizaMALRLRRRPKIQPPHTVLGTYTFPTRTVHVVLMEDDRIQWICDCEKFRRWSTRKDPPWCKHIAKAAARRSIERLTRRVAVTRNLEH
Ga0307511_1002489023300030521EctomycorrhizaMSYPQVIHRQSTTDEDYARCMALRLRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVHRNLEH
Ga0170824_10299907223300031231Forest SoilMALTLRRRPKTQPPLAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWSTHKDPPWCKHIAKAAARRSIERLTRRVALQRNLEH
Ga0170824_11361282933300031231Forest SoilMALRFRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCDKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNLEH
Ga0170824_11415997613300031231Forest SoilKIQPPLTVLGTYTFPTRTVQVVLMEDERIQWICDCEKFRRWSTRKDPPWCKHIAKAAARRSIERLTRRVAVPRNLEH
Ga0170824_11612638313300031231Forest SoilMAMRLRRRPRPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCDKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNLEH
Ga0302323_10274227623300031232FenLRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCENFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVQRIAEH
Ga0170820_1629199513300031446Forest SoilALRLRRRPKPQPPVAVLRTYTFPTRTVQVVLMEDDRIQWICDCDKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNFEH
Ga0170818_10443771423300031474Forest SoilMLASMALRLRRRPKTQPPLAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNAEH
Ga0170818_11564426733300031474Forest SoilMALRFRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCENFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVARNKNT
Ga0307509_100000053303300031507EctomycorrhizaMALRLRRRSKLQTPVTVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRVGVPRNLDH
Ga0310686_10277937223300031708SoilALKFPRRRSPRGEPAVLGTYTFPSRTVQILQTQDERVQWTCDCEKFRRQTANREPLWCKHIAKAAARRSIERLTRRVAVQRGLER
Ga0307474_1085491713300031718Hardwood Forest SoilMALKLRRRPKLQAPVAVLGTYSFPTRTVQVVLTGDDRIQWICDCEKFQRWTTHKEPLWCKHIAKAAARRSIERLTRRVAIPRNLEH
Ga0302321_10010545033300031726FenMAIRLRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCENFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVQRIAEH
Ga0307479_1000718663300031962Hardwood Forest SoilMLAPMPLRLRRRPKTQPPLAVLGTYTFPTRTVQVVLMEDDRVQWICDCEKFRRWSTHKDPPWCKHIAKAAARRSIERLTRRVAVQRNLEH
Ga0335085_1121644813300032770SoilMLPGMAMRFRRRPQPKPPQAVLGVYEFPTRTVQVVLTGDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRFAVVRNSEH
Ga0335082_1057179913300032782SoilRFRRRPQPKPPQAVLGVYEFPTRTVQVVLTGDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRFAVVRNSEH
Ga0335079_1014479733300032783SoilMLPAMAMRFRRRPQPKPPQAVLGVYEFPTRTVQVVLTEDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRFAVIRNTEH
Ga0335079_1081484323300032783SoilMAIRFRRRRAQRPPVAVLGTYTFPTRTVQVVLTADDRIQWICDCDKFQRWNSHKEPLWCKHIAKAAARRSIERLTRRVAVPRNIEH
Ga0335080_1126513823300032828SoilMLILMALRFRRRPQTNTQVEVLGTYSFPTRTVKVVLTRDERIQWICDCEKFQRWTSHREPLWCKHIAKAAARRSIERFTRRVGLPRTLEH
Ga0335069_1000379373300032893SoilMLPPMAMRFRRRPQPKPPQAVLGVYEFPARTVQVVLTEDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRFAVVRNSEH
Ga0335069_1160718523300032893SoilMALKLRRPFKLQQPVTVLGTYSFPTRTVQVVLTEDDRIQWVCDCEKFRRWTSHKEPLWCKHIAKAAARRSIERLTRRVTLPRSP
Ga0335076_1117749713300032955SoilVRIMLPGMAMRFRRRPQPKPPQAVLGVYEFPTRTVQVVLTGDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRFAVVRNSEH
Ga0307510_100000064413300033180EctomycorrhizaMAIRLRRRPKPQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTTHKEPPWCKHIAKAAARRSIERLTRRVAVPRNAEH
Ga0307510_10007149103300033180EctomycorrhizaMAIRLRRRPKLQPPVAVLGTYTFPTRTVQVVLMEDDRIQWICDCEKFRRWTAHKEPPWCKHIAKAAARRSIERLTRRVAVPRNIEH
Ga0316620_1190942113300033480SoilMALRLRRRSKPQPPVAVLGTYTFPTRTVQVVLMEDERIQWICDCEKFRRWTAHKDPPWCKHIAKAAARRSLERLTRRVGV
Ga0372946_0035423_160_4203300034384SoilMALRLRRRPKTQPPLAVLGTYTFPTRTVQVVLTEDERIQWICDCEKFRRWSTHKDPPWCKHIAKAAARRSIERLTRRVAMSRNLEH


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.