Scaffold Ga0315905_10003501

Overview

Basic Information

• Taxon OID: 3300032092
• Scaffold ID: Ga0315905_10003501
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16187
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (82.61%)
• Novel Protein Genes: 19
• Novel Protein Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Associated Families: 19

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001507	Metagenome / Metatranscriptome	681	Y
F002935	Metagenome	519	Y
F003379	Metagenome / Metatranscriptome	490	Y
F004051	Metagenome / Metatranscriptome	455	Y
F006744	Metagenome / Metatranscriptome	365	Y
F007644	Metagenome / Metatranscriptome	347	Y
F017134	Metagenome / Metatranscriptome	242	Y
F017829	Metagenome / Metatranscriptome	238	Y
F019325	Metagenome / Metatranscriptome	230	Y
F020168	Metagenome / Metatranscriptome	225	Y
F031497	Metagenome / Metatranscriptome	182	Y
F036238	Metagenome	170	Y
F045756	Metagenome	152	Y
F076101	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315905_100035011	F031497	AGGCGG	MSKSPEIKVAESLTNLMDDHWFNPTVFGRYLAEQPLHTIDRVMEMIASVISEQAKIYNVYLNRNETTEGLSLANELNECIKAYQVDNNLTNLKLPSRSFNVPKREEPKTTYKFGWRSEELDPFN
Ga0315905_1000350111	F036238	GGCGG	MGDRANFGFKQSNGETIVLYGHWAGHRMLENLADAVNAAGPRWTDESYATRICISQLVGDEWTSETGWGLSVNRILDNEHKIPVIDWENKTFSLHEEAPWSESDSNKVQGMQDEPIFSMALDAFVTKYSSQSVMV
Ga0315905_1000350113	F001043	AGGAG	MSDYKDGFQDGYKFAREELMERLAEIDITDIDSWVLDRLSEMIEGNQI
Ga0315905_1000350114	F000311	GAGG	MYFELTAPDRLSLEMAYWDAQITGLSPEFMPPLTFNIGTGSIEKVSRLRDKYNLVESYTSDYEPTEIYNRR
Ga0315905_1000350116	F002935	GAGG	MSYRTKGYMGNVLDGKKLATIANEILKAQYNNPSDITVDNLLLIELEEKNAFGDPKYAVVCSEGVGWEQDDYGCLEIPTNIGPMGLWNGRVFISVDKVKACQTIFKEDISDYIRVFGDRLDRNCSLWQSKMSVAPATILA
Ga0315905_1000350119	F017829	AGG	MANRFRVEIYDANKANDITIYSDQGVDKEYLTELVFSNIKNFSGKINAYVFDNVKKKKTTAMFLDESTVEFNKNLIKNATGIELGS
Ga0315905_100035012	F000852	GGA	MATKREYLKQQGITVGVRGRFSGAAKVALAEAMAKGITFTAETPSKKAK
Ga0315905_1000350121	F004051	GAGG	MTIDNHLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPSKETRWTSVSAKTLLGA
Ga0315905_1000350124	F020168	GAG	MIEIIGALIAITLILFLCSPIVLAVYMWNAAKVDTDNDGHEDIPNRW
Ga0315905_1000350126	F017134	N/A	MSVHSAILATQPTKGQLMDKFIVACLNYEICGAQETFEIESDYEVYGDDYICAECYASEEMEFFETIGWSDSDALASAGHGMDEDY
Ga0315905_1000350129	F076101	GGAG	MYKITLAYDGNAPHWQKDYANEFEAWKDFFAFTDWGFANEYSTVNLYNSEMKCFTKIFYREERKVVEVK
Ga0315905_100035013	F000441	AGGAGG	MKMSDQYINEQLNKAQQLLWGGSETENIEAHNIIAKLIKDRVEQADLI
Ga0315905_1000350133	F006744	AGAAGG	MNLDEFKAHIIATREASKAEALSVLSATMSVSTTTKGDN
Ga0315905_1000350137	F045756	GGAG	MTKYNVLISYVVEADSEISAVFALNKSLYTLSETELEKFNAFKVEEIN
Ga0315905_1000350141	F019325	AGGAG	MTQLTEQLFSTIVHEYHNGGVSSSYGLDTYTRKQVLAYLIRSKGCECIACI
Ga0315905_1000350145	F003379	AGGA	MKKVWALMFLIATAILSGAMLSKFLNWAGEREIFDFDLNEDIDNEELSAL
Ga0315905_100035015	F000263	GAGG	MNQEDIGLPPHLQRMVNAGVSGLDIMHGELKNLMLIAEQELAEAQAIEDESEEAMDSMDRTRCEGALDTLVSLYNLTYQLSFAIGAKNDN
Ga0315905_100035017	F007644	GGAG	MTRSSQFMEYMKLHLISLEQDLEENPASIHVVDIEGQIYATKHLLSVATDIMNSSNERY
Ga0315905_100035019	F001507	AGGTGG	METKPYAIHELVTAIYEDNYSHFDFMDNMNGGDCDCNLHQAMNLIAMYQEGLVDES