Scaffold Ga0306925_11590253

Overview

Basic Information

• Taxon OID: 3300031890
• Scaffold ID: Ga0306925_11590253
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 636
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002604	Metagenome / Metatranscriptome	544	Y
F009109	Metagenome / Metatranscriptome	323	Y
F063898	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306925_115902531	F063898	AGCAG	MTALTAMDKLLFWLGLGAAQKGAGSKEVKPSRHWVVSLVVGIL
Ga0306925_115902532	F002604	GAGG	MVDKLSIVGTVAAILVIPTAPSAQMGGAINPGVHVGGTVNPGASVRGAVERGIPGPDLGTWRSPSGQVHRSRKHSKAATKQRR
Ga0306925_115902533	F009109	GGA	MDSPMTLQEAKSIARHLGLTLRKVRSGDYRVNFRDGNETTAYYTDDLE