Scaffold Ga0315899_10178088

Overview

Basic Information

• Taxon OID: 3300031784
• Scaffold ID: Ga0315899_10178088
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2155
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.8268
  • Long. (^o): -83.1913
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002245	Metagenome / Metatranscriptome	578	Y
F004051	Metagenome / Metatranscriptome	455	Y
F006744	Metagenome / Metatranscriptome	365	Y
F038205	Metagenome / Metatranscriptome	166	Y
F103246	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315899_1017808810	F103246	GAG	MSRAITVKVATPKVIKALETKLATIKKDYAEQGANEAK
Ga0315899_101780882	F006744	AGG	MNLEEFKAHVLATRQASKSEALSVLSATITPTERKEN
Ga0315899_101780883	F038205	AGGA	MGNIAEIIAVACDECGGAGFLFWGDENNYDVEACECALDDWNI
Ga0315899_101780887	F002245	AGG	MSNLMKVPHTVVFEAIIDLDKIPANLLPTLIALDTEAITEMCKGATVHALGMSNTLEVANTGNYWAELTLKEGE
Ga0315899_101780889	F004051	AGGA	MTLGNKTYQVGDLFTTLKSKETGVIKEIIPNASGSVRVRLETENGERWTTVLADSLA