Scaffold Ga0308415_1001100

Overview

Basic Information

• Taxon OID: 3300031776
• Scaffold ID: Ga0308415_1001100
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11824
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N
F054900	Metagenome / Metatranscriptome	139	Y
F066811	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308415_100110011	F002372	AGGGGG	MPTRKEDALWSVVHQRSAHLRALLDGLDGVDVSIAYELDYYPYAIVDLLLMREDAPPVVVRSVYVQANRQWEYHSEYALRVVEAALQLVEEYRADPSVCGAVGV
Ga0308415_100110012	F002795	GGAGG	MATNSGLTLRGMVASYREFVSRTSGKLYRVITVYGDLVVGETVLCAVDGYDVFVDAPGYARGELVELPARLQFVRDSSGRPAVRLYVDEGVR
Ga0308415_100110014	F002229	GGAGG	MVTLLTVDGVEEVDYAPSDVEIRDALGDRGLYGIVLDDDVTWIRLSSGLGWWTIVHGRRVTATVAPVGWCWVADGCGDRGYWSPSLACIPGEVRALCGSCGAEYVED
Ga0308415_100110016	F004024	AGGAGG	MHSERDYVRQPSSLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLSIAAPRLYERIAPIIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR
Ga0308415_100110017	F000642	AGGA	MQEMSIALALCAVGAAIWYMRRREASGRVRGWLLLYDDLGGWRALPAVYGDSGVVADGVTYPASLPVVRAGRELLWIARCESAALIDHQALERAREAAALSSLWRGGGQWLDFLRIVGVVLPAAFAYFTWAQVSALQGLVAQILALVGER
Ga0308415_100110018	F001381	GAG	MQYVIATLYVLLWLALAALAALVLPRWALPVALVQLAIAYVVVRSSLLGAVDADDER
Ga0308415_100110019	F000855	GAGG	MDWLEDFWSKVVSWFDQISAAVHNGIIEWVNSLIQIWNGWMDSLLHPARAMPSVPALRWIVGWLANIVDYTTLMYMLVDYVAYAWIVRQLLVAQLTIVVVGLGFRAWLVIRRVVLVS
Ga0308415_10011002	F002978	GAGG	VSVRDWRVTLKPWADRRLWFVQARCGGRVVWGVVYDADDPDSVSLARRAVATLRAAGADCSALPGALPGVGQKP
Ga0308415_100110023	F054900	AGGAG	MCLTISGDCASIGAMEYERAMLQLMVYGVTLLMVYVVDRWCRG
Ga0308415_10011007	F066811	AGGAGG	MEFNNQPVFNAPSMTDILNAATSIFNPFVSVIALAIGVTLGARMLGRIVRLF
Ga0308415_10011008	F054900	AGGAG	MCLTISGDCASIGAMEYERAMLQLMVYGVTLFMLYVVDRWYRG