Scaffold Ga0315907_10003962

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10003962
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16938
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (70.21%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Associated Families: 16

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F001019	Metagenome / Metatranscriptome	804	Y
F001507	Metagenome / Metatranscriptome	681	Y
F002071	Metagenome / Metatranscriptome	596	Y
F004666	Metagenome / Metatranscriptome	428	Y
F006744	Metagenome / Metatranscriptome	365	Y
F007470	Metagenome / Metatranscriptome	350	Y
F008132	Metagenome / Metatranscriptome	338	Y
F014250	Metagenome / Metatranscriptome	264	Y
F015988	Metagenome / Metatranscriptome	250	Y
F038205	Metagenome / Metatranscriptome	166	Y
F043940	Metagenome / Metatranscriptome	155	Y
F057310	Metagenome / Metatranscriptome	136	Y
F085710	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000396211	F085710	AGTAGG	MDFNEYYDDIYLEIYEEFGASAVSDPDYAEQLAKDKGVR
Ga0315907_1000396212	F057310	AGGA	MKITYSVWQGSIIKGSGFTAKTMKEVIKTIDELNEGGLKPKFEAFISKVEQDNK
Ga0315907_1000396213	F008132	AGGA	MTKWDTIQEDIKDAYAHLAEEEMYENLMAEEEDVFGFVKAIQIDHLTDDELDEVFNMFGD
Ga0315907_1000396215	F000447	GAG	MGFIEFARIDEMGVEWVDLDDATPQELLDFEIHLFQEGAI
Ga0315907_1000396216	F006744	AGG	MNLDEFKAYVLATRQASKAEALSVLSATIQETKGKEN
Ga0315907_1000396217	F038205	AGGA	MTDLKEIIAVACDECGGAGFLFWGDENNYDVEQCDCALDDWGL
Ga0315907_1000396223	F002071	AGG	MLEIGQTLTTTKSGVTGVIKAIDNHPSGVNRVLLDVNGSERWTSVSN
Ga0315907_1000396225	F043940	N/A	MLYFVSLLTESNKMKNRFRVEIYDENKNNDVTIYSEQGVDKEYLTELVYSNIRGFDGNVRAYVYDNLRKKKVTAVYVPMEIISRLKTKIPSAPTNLGLV
Ga0315907_1000396229	F000311	GAGG	MYFELTAPNQLALARAIWDAELNGLDPEKMDSLTFNIGTGSIEKVSRLRDRFNLTESYVSEFEPTGYQRS
Ga0315907_1000396230	F007470	N/A	MYQSLNLQDIKGVKVDYQDGFEDGVKFAREIIVNNIRLWAETSDDGPAFDEIADRIEFGKVDYDL
Ga0315907_1000396232	F000450	GAGG	VGDRANFGFVQPNGETIVLYGHWAGSNMLGKLADAVIAARPRWNDPSYATRITISQLIGDQWNMETGWGLHVNEISDNEHKIAIVDWEQQIFSLHEEDDFRNQDNKVRGMKNQAIFTMDLSTFCEKYALNEILTV
Ga0315907_1000396234	F001507	GGA	MMKTKPYTVDELITTIYEDNYSHIEFIENMNGGDCDCNIHNTMNLIQEYM
Ga0315907_1000396235	F015988	AGGAG	MNKLIKYMEIHIISLEQDLENIAQEMESLDPSSKAYNELDFEYNHWSGQLLNARHFLSVANDILSETKEN
Ga0315907_1000396236	F014250	AGGAG	MQPISMELPDRLQKQVDMGESGTDILHGELKNLMYEAEEQLILAQEEEDRTEEAMDSMERKYWEGQLDGLTHVYGLTYALAFAIDERTKKNG
Ga0315907_1000396239	F001019	GGAGG	MLDYEPTLEIVEIEYSVSPGGVDSYEVYDKLDIPLSVPIYETESLTDAVQYCYNLGQDFIVRTVAAWHRNEDVYANV
Ga0315907_1000396241	F004666	GGA	MTSKREYLTSKGITVGRRGRFSAAAKNALAEAEKNGIKFTAEAPQPKK